Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LOK74_RS06845 Genome accession   NZ_CP087263
Coordinates   1375091..1376332 (+) Length   413 a.a.
NCBI ID   WP_230045905.1    Uniprot ID   -
Organism   Brevibacillus humidisoli strain MMS20-4M-10-Y     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1370091..1381332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK74_RS06820 (LOK74_06820) - 1370935..1371198 (+) 264 WP_230045900.1 DUF3243 domain-containing protein -
  LOK74_RS06825 (LOK74_06825) - 1371308..1372102 (+) 795 WP_230045901.1 DUF3388 domain-containing protein -
  LOK74_RS06830 (LOK74_06830) - 1372106..1372978 (+) 873 WP_230045902.1 helix-turn-helix domain-containing protein -
  LOK74_RS06835 (LOK74_06835) rimO 1373085..1374428 (+) 1344 WP_230045903.1 30S ribosomal protein S12 methylthiotransferase RimO -
  LOK74_RS06840 (LOK74_06840) pgsA 1374429..1375004 (+) 576 WP_230045904.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LOK74_RS06845 (LOK74_06845) cinA 1375091..1376332 (+) 1242 WP_230045905.1 competence/damage-inducible protein A Machinery gene
  LOK74_RS06850 (LOK74_06850) - 1376338..1377927 (+) 1590 WP_230045906.1 DEAD/DEAH box helicase -
  LOK74_RS06855 (LOK74_06855) recA 1378075..1379133 (+) 1059 WP_277613427.1 recombinase RecA Machinery gene
  LOK74_RS06860 (LOK74_06860) - 1379211..1379870 (+) 660 WP_230045907.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44590.20 Da        Isoelectric Point: 5.6952

>NTDB_id=628182 LOK74_RS06845 WP_230045905.1 1375091..1376332(+) (cinA) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
MRAEIVAVGTELLLGQIANTNAQFLSQKLAELGINVYFHTVVGDNYERLLFVTRQAAARSDLVIFTGGLGPTQDDMTKET
VAAHLGLSLVIDDTAMGRIASFYEQRGITMTENNRKQALVIEGGTIFPNDRGMAPGMAVTHADTTYVLLPGPPSELYPMV
DKYVLPYLNHLLPAKQVFHSRVLRFFGIGESALEERLLDLIERQSNPTIAPYAKEFEVTLRITARADTVEAAEQLIAPVE
SQIRSRVGEYIYGEGETPLHEVFVDALIRQQVTISSAESCTGGALSALITSVPGSSAAYRGGIVCYSNETKQKLLGIPGD
LLASDGAVSKSVAAALAEQVRRTCDTTVGISITGVAGPDPLEDKPVGLVYIGVSVQGLPVLVKELKLAGHRQAIIGRTAK
FAMFYALQRLKER

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=628182 LOK74_RS06845 WP_230045905.1 1375091..1376332(+) (cinA) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
ATGAGAGCGGAGATCGTAGCGGTTGGCACAGAATTGCTGCTCGGACAGATTGCAAACACGAACGCACAGTTTTTGTCCCA
AAAACTGGCGGAATTAGGGATTAACGTTTATTTTCATACCGTTGTTGGAGATAATTACGAACGTCTGTTGTTTGTTACCC
GTCAGGCGGCCGCCCGTTCTGATCTGGTCATTTTTACCGGTGGCCTGGGTCCGACCCAGGATGACATGACCAAGGAGACA
GTGGCGGCCCACTTGGGCCTTTCACTCGTCATCGACGATACGGCGATGGGCAGAATTGCCTCTTTTTACGAACAGCGCGG
GATCACGATGACCGAAAACAATCGGAAACAAGCACTTGTCATCGAAGGAGGCACCATCTTTCCCAACGATCGCGGGATGG
CACCGGGAATGGCGGTTACACACGCTGATACGACATATGTGCTTCTGCCCGGACCGCCGAGTGAGCTGTACCCGATGGTT
GACAAGTATGTCCTCCCGTACCTGAACCATTTACTGCCTGCCAAACAGGTATTTCACTCACGTGTACTCCGTTTTTTTGG
GATTGGCGAATCTGCCCTTGAGGAGCGTTTGCTCGATTTGATCGAACGGCAGTCCAACCCCACGATTGCCCCCTATGCCA
AAGAATTTGAAGTCACGTTGCGAATCACTGCCCGCGCCGATACGGTGGAGGCAGCGGAGCAGTTGATCGCCCCGGTTGAG
TCCCAGATCCGCAGCCGTGTGGGTGAATACATCTATGGTGAGGGTGAGACACCGCTGCATGAGGTGTTTGTCGATGCACT
GATCCGACAGCAGGTGACCATCTCCAGTGCAGAGAGCTGTACGGGAGGTGCGCTGTCGGCGTTGATCACCTCCGTACCAG
GCAGTTCTGCTGCCTATCGCGGCGGAATCGTTTGCTACAGCAACGAAACGAAACAGAAGCTTCTTGGCATTCCAGGTGAC
TTGTTGGCAAGCGATGGTGCAGTCAGTAAATCGGTTGCCGCCGCATTGGCGGAACAGGTACGGCGTACCTGCGATACGAC
CGTTGGCATATCGATTACAGGTGTGGCCGGACCGGATCCGCTGGAAGACAAACCTGTCGGGCTGGTATATATTGGGGTTT
CCGTGCAGGGATTGCCGGTGCTTGTGAAGGAGCTCAAGCTGGCGGGGCACCGCCAAGCCATTATTGGACGCACAGCGAAA
TTCGCGATGTTTTATGCGTTGCAACGTTTAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.515

99.758

0.494
  cinA Streptococcus mitis NCTC 12261

47.156

100

0.482
  cinA Streptococcus pneumoniae TIGR4

46.445

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.209

100

0.472
  cinA Streptococcus pneumoniae R6

46.209

100

0.472
  cinA Streptococcus mitis SK321

46.318

100

0.472
  cinA Streptococcus pneumoniae D39

45.972

100

0.47
  cinA Streptococcus mutans UA159

47.558

94.189

0.448
  cinA Streptococcus suis isolate S10

39.848

95.4

0.38