Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N288_RS09445 Genome accession   NC_022524
Coordinates   1869220..1870266 (+) Length   348 a.a.
NCBI ID   WP_022543735.1    Uniprot ID   U5L5Q2
Organism   Bacillus infantis NRRL B-14911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864220..1875266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS09420 (N288_10110) - 1864240..1864503 (+) 264 WP_009791674.1 DUF3243 domain-containing protein -
  N288_RS09425 (N288_10115) - 1864697..1865488 (+) 792 WP_022543732.1 YmfK family protein -
  N288_RS09430 (N288_10120) - 1865509..1866414 (+) 906 WP_022543733.1 helix-turn-helix domain-containing protein -
  N288_RS09435 (N288_10125) pgsA 1866607..1867185 (+) 579 WP_009791529.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N288_RS09440 (N288_10130) cinA 1867233..1868474 (+) 1242 WP_022543734.1 competence/damage-inducible protein A Machinery gene
  N288_RS09445 (N288_10135) recA 1869220..1870266 (+) 1047 WP_022543735.1 recombinase RecA Machinery gene
  N288_RS09450 (N288_10140) rny 1870591..1872153 (+) 1563 WP_009791524.1 ribonuclease Y -
  N288_RS09455 (N288_10145) - 1872267..1873064 (+) 798 WP_009791523.1 TIGR00282 family metallophosphoesterase -
  N288_RS09460 (N288_10150) spoVS 1873264..1873524 (+) 261 WP_009791522.1 stage V sporulation protein SpoVS -
  N288_RS09465 (N288_10155) - 1873758..1874684 (+) 927 WP_022543737.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38103.29 Da        Isoelectric Point: 4.9197

>NTDB_id=62504 N288_RS09445 WP_022543735.1 1869220..1870266(+) (recA) [Bacillus infantis NRRL B-14911]
MSERQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTSPSGSLALDVALGVGGYPKGRIVEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSRTLAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDMGSELDIVQKSGSWYSYNEERLGQGRENAKQFLKENPDLRLTIQKQ
IRDHYGLDEEKLLDENQDQDQEHFELID

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=62504 N288_RS09445 WP_022543735.1 1869220..1870266(+) (recA) [Bacillus infantis NRRL B-14911]
GTGAGTGAACGTCAAGCTGCATTAGATATGGCTTTAAAGCAAATAGAAAAACAATTTGGTAAAGGTTCGATCATGAAGCT
TGGAGAGCAGACAGACCGCAAAATTTCAACTTCTCCGAGCGGCTCCCTGGCGCTGGATGTTGCGCTTGGTGTCGGAGGCT
ACCCTAAGGGGCGCATAGTCGAAATCTATGGTCCGGAAAGCTCAGGTAAAACGACTGTTGCCCTTCATGCGATTGCTGAG
GTGCAGGCAAATGGCGGACAAGCTGCCTTTATCGATGCTGAGCATGCCCTTGATCCTGTATATGCCCAAAAGCTGGGCGT
AAACATTGATGAATTGCTGCTTTCCCAGCCTGATACCGGGGAACAGGCGCTAGAAATTGCTGAAGCCCTTGTGCGAAGCG
GTGCCATTGATATCCTTGTCATCGACTCAGTAGCGGCACTTGTACCGAAAGCAGAGATTGAAGGAGAAATGGGTGACTCC
CATGTCGGTCTCCAGGCCCGCCTTATGTCCCAGGCCCTTCGTAAATTATCTGGTGCGATCAATAAATCAAGGACGCTCGC
CATCTTTATCAACCAGATCCGTGAAAAAGTCGGAGTCATGTTCGGAAATCCTGAAACCACTCCAGGCGGCCGTGCTCTTA
AGTTCTACTCTTCCGTACGTCTGGAAGTGCGCCGTGCTGAAACGTTAAAGCAGGGCAATGAAATGGTCGGAAACAAGACA
AAAATCAAGGTCGTCAAAAACAAGGTTGCTCCTCCATTTCGTGTCGCAGAAGTTGACATCATGTACGGGGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATATGGGCTCTGAACTGGATATTGTCCAGAAGAGCGGCTCCTGGTATTCATACAATGAAG
AGAGACTGGGCCAAGGGCGTGAGAATGCGAAACAGTTCCTTAAGGAGAACCCTGATTTAAGGCTGACTATCCAAAAGCAG
ATCCGCGACCACTATGGTCTTGATGAGGAGAAGTTATTAGATGAAAACCAGGATCAGGATCAGGAGCATTTCGAACTGAT
TGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L5Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.939

94.253

0.848
  recA Latilactobacillus sakei subsp. sakei 23K

75.229

93.966

0.707
  recA Streptococcus mutans UA159

67.847

97.414

0.661
  recA Streptococcus mitis NCTC 12261

66.764

98.563

0.658
  recA Streptococcus mitis SK321

66.764

98.563

0.658
  recA Streptococcus pneumoniae Rx1

68.788

94.828

0.652
  recA Streptococcus pneumoniae D39

68.788

94.828

0.652
  recA Streptococcus pneumoniae R6

68.788

94.828

0.652
  recA Streptococcus pneumoniae TIGR4

68.788

94.828

0.652
  recA Streptococcus pyogenes NZ131

68.293

94.253

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.576

94.828

0.641
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae MS11

65.443

93.966

0.615
  recA Neisseria gonorrhoeae strain FA1090

65.443

93.966

0.615
  recA Ralstonia pseudosolanacearum GMI1000

67.732

89.943

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.701

0.609
  recA Helicobacter pylori strain NCTC11637

63.83

94.54

0.603
  recA Helicobacter pylori 26695

63.83

94.54

0.603
  recA Acinetobacter baylyi ADP1

61.111

98.276

0.601
  recA Vibrio cholerae strain A1552

65.312

91.954

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

91.954

0.601
  recA Glaesserella parasuis strain SC1401

59.942

99.713

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.966

0.595
  recA Pseudomonas stutzeri DSM 10701

63.95

91.667

0.586
  recA Acinetobacter baumannii D1279779

62.305

92.241

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment