Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N288_RS09440 Genome accession   NC_022524
Coordinates   1867233..1868474 (+) Length   413 a.a.
NCBI ID   WP_022543734.1    Uniprot ID   U5L7Y2
Organism   Bacillus infantis NRRL B-14911     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1862233..1873474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS09415 (N288_10105) ymfI 1863441..1864163 (+) 723 WP_035401341.1 elongation factor P 5-aminopentanone reductase -
  N288_RS09420 (N288_10110) - 1864240..1864503 (+) 264 WP_009791674.1 DUF3243 domain-containing protein -
  N288_RS09425 (N288_10115) - 1864697..1865488 (+) 792 WP_022543732.1 YmfK family protein -
  N288_RS09430 (N288_10120) - 1865509..1866414 (+) 906 WP_022543733.1 helix-turn-helix domain-containing protein -
  N288_RS09435 (N288_10125) pgsA 1866607..1867185 (+) 579 WP_009791529.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N288_RS09440 (N288_10130) cinA 1867233..1868474 (+) 1242 WP_022543734.1 competence/damage-inducible protein A Machinery gene
  N288_RS09445 (N288_10135) recA 1869220..1870266 (+) 1047 WP_022543735.1 recombinase RecA Machinery gene
  N288_RS09450 (N288_10140) rny 1870591..1872153 (+) 1563 WP_009791524.1 ribonuclease Y -
  N288_RS09455 (N288_10145) - 1872267..1873064 (+) 798 WP_009791523.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44811.46 Da        Isoelectric Point: 5.1467

>NTDB_id=62503 N288_RS09440 WP_022543734.1 1867233..1868474(+) (cinA) [Bacillus infantis NRRL B-14911]
MNAEIIAVGSELLLGQINNTNARFLSRQLADIGINVFYHTVVGDNPSRLKAAIGIAEERSDLVIFTGGLGPTKDDLTKEA
IAEHLGAELVHNEEALRQIELYFERTGRMMTENNRKQAIVLKGSEVLPNDHGMAPGMVYAKGAKTYMLLPGPPKEMEPMF
LAYGHPALLARMDSQDKILSRVLRFFGIGEAMLETEIEDLIDSQSNPTIAPLAADGEVTLRLTAKHQSLDAALRLIEEAE
EKILSRTGEFFYGYDETSLMNELTKRLKEKGLTIGCAESLTGGMFQQEFTSIPGAGSLLKGGVVCYTNEVKEKVLKVKKE
TIEKDGVVSKACAAELAENAASLTGADIGISFTGVAGPDELEGKPVGTVYIGIAIKGRPVHVEKLNLGGSRAANRSRSVK
YGCHFLMKELEEI

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=62503 N288_RS09440 WP_022543734.1 1867233..1868474(+) (cinA) [Bacillus infantis NRRL B-14911]
ATGAATGCAGAAATCATTGCGGTGGGTTCAGAGCTTTTGCTAGGACAAATCAACAATACAAACGCCAGATTCCTCTCCAG
GCAGCTGGCGGATATCGGCATCAATGTGTTTTACCATACGGTTGTTGGAGACAATCCTTCCAGGCTCAAAGCGGCGATCG
GGATAGCCGAGGAGCGCTCTGACCTGGTCATCTTCACAGGGGGCCTCGGCCCGACCAAGGATGATCTGACAAAAGAGGCC
ATTGCAGAGCATCTGGGCGCCGAGCTTGTCCACAATGAAGAGGCGCTCCGCCAAATCGAGCTTTATTTCGAAAGGACCGG
CCGGATGATGACAGAGAACAATCGGAAGCAGGCGATTGTACTTAAAGGCTCTGAAGTGCTTCCGAATGACCATGGCATGG
CACCTGGAATGGTATATGCAAAAGGTGCTAAAACGTATATGCTCCTTCCCGGCCCTCCAAAGGAAATGGAGCCGATGTTC
CTCGCATACGGCCACCCCGCACTGCTTGCCAGGATGGATTCTCAGGACAAAATCCTCTCCAGGGTGCTCCGGTTCTTCGG
GATTGGGGAAGCTATGCTTGAGACAGAAATCGAGGACCTGATTGACAGCCAGTCCAATCCAACGATAGCGCCCCTCGCTG
CAGACGGGGAAGTGACCCTGAGGCTGACAGCCAAGCATCAAAGCCTTGACGCGGCACTGCGGCTGATAGAAGAGGCAGAA
GAGAAGATACTCAGCAGGACAGGTGAATTCTTCTATGGGTATGATGAAACCTCCTTAATGAATGAGCTGACAAAGCGTCT
GAAGGAAAAAGGGCTGACGATCGGCTGTGCGGAAAGTCTGACAGGCGGGATGTTCCAGCAGGAATTCACTTCCATACCTG
GAGCGGGAAGCCTTCTTAAGGGCGGAGTTGTCTGCTATACGAACGAAGTGAAGGAAAAAGTCCTGAAGGTAAAAAAGGAA
ACCATTGAAAAAGATGGCGTTGTCAGCAAAGCCTGTGCCGCAGAACTGGCTGAAAATGCTGCTTCCCTGACAGGCGCCGA
CATTGGGATCAGCTTTACCGGGGTTGCCGGACCGGATGAGCTTGAAGGCAAACCTGTCGGCACGGTCTACATCGGGATAG
CCATCAAAGGCAGGCCGGTACATGTGGAGAAGCTGAACCTCGGCGGATCGCGTGCAGCCAACCGATCACGATCAGTGAAG
TACGGCTGCCATTTCTTAATGAAAGAGCTGGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L7Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.439

99.274

0.62
  cinA Streptococcus pneumoniae TIGR4

47.381

100

0.482
  cinA Streptococcus mitis SK321

47.143

100

0.479
  cinA Streptococcus pneumoniae Rx1

46.905

100

0.477
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae R6

46.905

100

0.477
  cinA Streptococcus pneumoniae D39

46.667

100

0.475
  cinA Streptococcus mutans UA159

44.444

100

0.446
  cinA Streptococcus suis isolate S10

38.677

95.157

0.368

Multiple sequence alignment