Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LLY41_RS14655 Genome accession   NZ_CP086235
Coordinates   2910244..2911284 (-) Length   346 a.a.
NCBI ID   WP_095242413.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2905244..2916284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS14635 (LLY41_14595) - 2905714..2906637 (-) 924 WP_304585728.1 dipeptidase -
  LLY41_RS14640 (LLY41_14600) spoVS 2906795..2907055 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  LLY41_RS14645 (LLY41_14605) - 2907387..2908184 (-) 798 WP_304585729.1 TIGR00282 family metallophosphoesterase -
  LLY41_RS14650 (LLY41_14610) rny 2908315..2909874 (-) 1560 WP_095242414.1 ribonuclease Y -
  LLY41_RS14655 (LLY41_14615) recA 2910244..2911284 (-) 1041 WP_095242413.1 recombinase RecA Machinery gene
  LLY41_RS14660 (LLY41_14620) cinA 2911555..2912805 (-) 1251 WP_304585730.1 competence/damage-inducible protein A Machinery gene
  LLY41_RS14665 (LLY41_14625) pgsA 2912834..2913412 (-) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LLY41_RS14670 (LLY41_14630) - 2913529..2914434 (-) 906 WP_304585731.1 RodZ domain-containing protein -
  LLY41_RS14675 (LLY41_14635) - 2914456..2915247 (-) 792 WP_035330727.1 YmfK family protein -
  LLY41_RS14680 (LLY41_14640) - 2915483..2915740 (-) 258 WP_095242410.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37624.94 Da        Isoelectric Point: 5.0104

>NTDB_id=623905 LLY41_RS14655 WP_095242413.1 2910244..2911284(-) (recA) [Cytobacillus firmus strain T8]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSSIRLEVRRAEALKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSFNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDEEKVASGDEEQEELKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=623905 LLY41_RS14655 WP_095242413.1 2910244..2911284(-) (recA) [Cytobacillus firmus strain T8]
GTGAGTGATCGTCAAGCAGCTCTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCCATCATGAAGCT
CGGGGAACAGACTGACCGTAGGATTTCCACTGTACCAAGCGGATCTCTTGCACTTGATGCAGCTCTTGGGGTAGGCGGCT
ATCCAAGAGGACGTATTATTGAAGTTTATGGACCGGAGAGCTCCGGTAAAACAACAGTAGCCCTGCATGCTATTGCAGAA
GTTCAGGCAAGCGGCGGACAAGCAGCGTTTATCGATGCCGAACATGCTTTAGACCCTGTTTATGCGCAAAAACTTGGTGT
AAATATTGACGAGCTGCTTCTTTCCCAGCCGGATACCGGAGAGCAGGCGCTTGAAATTGCAGAAGCCCTTGTTCGAAGCG
GTGCTATTGATATTCTCGTAGTTGACTCTGTGGCAGCCCTTGTTCCCAAGGCTGAAATTGAAGGAGAAATGGGAGACTCC
CATGTGGGTCTGCAGGCCCGCCTAATGTCACAGGCACTTCGTAAGCTATCAGGTGCAATCAACAAATCAAAGACAATCGC
GATTTTCATTAACCAAATCCGTGAAAAAATCGGAATTATGTTTGGAAACCCTGAGACGACTCCAGGGGGACGCGCACTGA
AGTTCTATTCTTCCATTCGCCTTGAAGTTCGCCGTGCAGAAGCTCTTAAGCAAGGCAATGAAATGGTCGGTAATAAGACA
AAGATTAAGGTTGTCAAAAATAAAGTCGCTCCTCCATTCCGAGTGGCGGAAGTTGACATCATGTATGGTGAAGGAATTTC
CAAGGAAGGTGAAATCATCGATCTTGGCTCTGAGCTGGATATTGTCCAAAAGAGCGGTTCATGGTACTCATTCAACGAGG
AGCGCCTTGGCCAAGGCCGTGAAAACGCCAAAGTATTCCTAAAAGAAAATCCTGAAATCCGCCTGACTATCCAAAAACAA
ATCCGCGAACATTATGGACTTGATGAAGAAAAAGTAGCCAGCGGAGACGAAGAGCAGGAAGAATTAAAGCTGATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.663

95.954

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

71.765

98.266

0.705
  recA Streptococcus pneumoniae D39

66.667

99.711

0.665
  recA Streptococcus pneumoniae R6

66.667

99.711

0.665
  recA Streptococcus pneumoniae Rx1

66.667

99.711

0.665
  recA Streptococcus pneumoniae TIGR4

66.667

99.711

0.665
  recA Streptococcus mutans UA159

65.805

100

0.662
  recA Streptococcus mitis NCTC 12261

67.359

97.399

0.656
  recA Streptococcus mitis SK321

67.576

95.376

0.645
  recA Streptococcus pyogenes NZ131

66.463

94.798

0.63
  recA Lactococcus lactis subsp. cremoris KW2

64.392

97.399

0.627
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.509

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.138

94.509

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Helicobacter pylori strain NCTC11637

62.463

98.555

0.616
  recA Helicobacter pylori 26695

62.17

98.555

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

92.775

0.61
  recA Vibrio cholerae strain A1552

65.732

92.775

0.61
  recA Acinetobacter baylyi ADP1

60.29

99.711

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Pseudomonas stutzeri DSM 10701

63.438

92.486

0.587
  recA Glaesserella parasuis strain SC1401

63.636

92.197

0.587
  recA Acinetobacter baumannii D1279779

63.043

93.064

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566