Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LLY41_RS14660 Genome accession   NZ_CP086235
Coordinates   2911555..2912805 (-) Length   416 a.a.
NCBI ID   WP_304585730.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2906555..2917805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS14640 (LLY41_14600) spoVS 2906795..2907055 (-) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  LLY41_RS14645 (LLY41_14605) - 2907387..2908184 (-) 798 WP_304585729.1 TIGR00282 family metallophosphoesterase -
  LLY41_RS14650 (LLY41_14610) rny 2908315..2909874 (-) 1560 WP_095242414.1 ribonuclease Y -
  LLY41_RS14655 (LLY41_14615) recA 2910244..2911284 (-) 1041 WP_095242413.1 recombinase RecA Machinery gene
  LLY41_RS14660 (LLY41_14620) cinA 2911555..2912805 (-) 1251 WP_304585730.1 competence/damage-inducible protein A Machinery gene
  LLY41_RS14665 (LLY41_14625) pgsA 2912834..2913412 (-) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LLY41_RS14670 (LLY41_14630) - 2913529..2914434 (-) 906 WP_304585731.1 RodZ domain-containing protein -
  LLY41_RS14675 (LLY41_14635) - 2914456..2915247 (-) 792 WP_035330727.1 YmfK family protein -
  LLY41_RS14680 (LLY41_14640) - 2915483..2915740 (-) 258 WP_095242410.1 DUF3243 domain-containing protein -
  LLY41_RS14685 (LLY41_14645) ymfI 2915856..2916578 (-) 723 WP_095242409.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45389.90 Da        Isoelectric Point: 4.7524

>NTDB_id=623906 LLY41_RS14660 WP_304585730.1 2911555..2912805(-) (cinA) [Cytobacillus firmus strain T8]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHFGKELVMDEQALDSIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLINEAE
TKILDRVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPLQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=623906 LLY41_RS14660 WP_304585730.1 2911555..2912805(-) (cinA) [Cytobacillus firmus strain T8]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTACTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCGGAGCGCCTGAGATCGGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTAATCGTCTTCACGGGCGGCCTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCCCGCCATTTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGATTCTATACAGCTTTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAACAAAAAACAGGCTCTGGTTCTTGAGGATGCACAGGTGCTGCCTAACGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGTCATGTTTTCATGCTTCTTCCGGGACCTCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCGGCCCTCCAATCGAAGCTCGGCACCGAGGATGTGATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTTGAAACGGAGATTGAAGATATTATCGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCAT
CTGATGGGGAAGTTACTCTGAGGCTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGATCGTGTCGGCGAATACTTTTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCCGCAGCGGAGAGCTTAACAGGCGGCATGTTTCAGGAGGAGTTTACATCCATTCCCG
GTGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTCGTAAGTGCACAGTGTGCCGCCGAGCTTGCTGAGAATGTAGCAAGCCTGACAAATGCCGA
TATCGGAATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTGTATATAGGCATTT
GGATTAAAGGAAGGCCGTTGCAGACCGAAAAGCTGAACCTTGGAGGAACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.827

98.798

0.601
  cinA Streptococcus mitis SK321

45.952

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.462
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.459
  cinA Streptococcus mutans UA159

45.346

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.457
  cinA Streptococcus pneumoniae R6

45.238

100

0.457
  cinA Streptococcus pneumoniae D39

45

100

0.454
  cinA Streptococcus suis isolate S10

38.931

94.471

0.368