Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LK420_RS07220 Genome accession   NZ_CP085949
Coordinates   1498728..1499792 (-) Length   354 a.a.
NCBI ID   WP_021034531.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493728..1504792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS07195 (LK420_07195) arcC 1494628..1495560 (-) 933 WP_021034536.1 carbamate kinase -
  LK420_RS07200 (LK420_07200) - 1495570..1496574 (-) 1005 WP_021034535.1 ornithine carbamoyltransferase -
  LK420_RS07205 (LK420_07205) - 1496989..1497807 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  LK420_RS07210 (LK420_07210) crcB 1497807..1498193 (+) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  LK420_RS07215 (LK420_07215) recX 1498190..1498648 (-) 459 WP_041175256.1 recombination regulator RecX -
  LK420_RS07220 (LK420_07220) recA 1498728..1499792 (-) 1065 WP_021034531.1 recombinase RecA Machinery gene
  LK420_RS07225 (LK420_07225) sxy/tfoX 1500164..1500817 (+) 654 WP_080228090.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38158.64 Da        Isoelectric Point: 4.8875

>NTDB_id=621514 LK420_RS07220 WP_021034531.1 1498728..1499792(-) (recA) [Haemophilus influenzae strain FDAARGOS_1562]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYSYNGEKIGQGKANSMKWLNENIEKSDEL
EARLRAELVANPEQALMADIEQSENNTELESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=621514 LK420_RS07220 WP_021034531.1 1498728..1499792(-) (recA) [Haemophilus influenzae strain FDAARGOS_1562]
ATGGCAACTCAAGAAGAAAAACAAAAAGCACTAGCGGCTGCATTAGGGCAAATAGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTAGGCGATACTAAAACGTTGGATGTAGAATCTATTTCTACCGGATCACTTGGCTTAGATGTTGCACTGGGAA
TTGGTGGTTTACCTATGGGTCGAATTGTAGAAATATTCGGACCTGAATCATCTGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCAGGAAAAACCTGTGCATTTATTGATGCAGAACACGCACTTGACCCTATTTATGCAGCAAA
ACTTGGTGTAGATGTAAAAGAACTTTTTGTTTCTCAACCAGATAATGGAGAACAAGCACTTGAAATATGTGATGCATTAG
TTCGTTCTGGTGCAATTGATGTAATTATTGTGGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGCGATATG
GGGGATTCTCATATGGGTCTGCAAGCGCGTTTAATGTCTCAAGCTTTGCGTAAACTCACAGGTCAAATTAAAAATGCAAA
CTGTCTAGTTGTGTTTATTAACCAAATCCGTATGAAAATAGGTGTAATGTTTGGTAATCCTGAAACTACCACAGGCGGTA
ATGCATTAAAATTCTATTCATCCGTTCGCTTAGATATTCGCCGTACAGGTTCTGTAAAAGACGGGGAAAATATTATAGGA
AATGAAACTCGCGTAAAAGTAGTAAAAAACAAACTAGCAGCTCCATTCCGCCAAGTGGATTTCCAAATTCTCTATGGAGA
AGGCATTTCAAAAGCAGGTGAATTATTAGAACTTGGGGTAAAACACAAACTTGTAGAAAAATCAGGTGCGTGGTATTCCT
ATAATGGCGAAAAAATTGGTCAAGGAAAGGCTAATTCAATGAAATGGCTTAACGAAAATATAGAAAAATCAGATGAATTA
GAAGCTCGTTTACGTGCTGAATTAGTAGCTAATCCAGAACAAGCCTTAATGGCGGATATTGAACAATCTGAAAATAATAC
TGAATTAGAAAGTGATTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

75.723

97.74

0.74
  recA Vibrio cholerae strain A1552

73.988

97.74

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.988

97.74

0.723
  recA Pseudomonas stutzeri DSM 10701

75.385

91.808

0.692
  recA Neisseria gonorrhoeae MS11

74.923

91.243

0.684
  recA Neisseria gonorrhoeae MS11

74.923

91.243

0.684
  recA Neisseria gonorrhoeae strain FA1090

74.923

91.243

0.684
  recA Acinetobacter baylyi ADP1

69.452

98.023

0.681
  recA Acinetobacter baumannii D1279779

67.435

98.023

0.661
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

94.915

0.593
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.669

89.548

0.579
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus pneumoniae R6

56.695

99.153

0.562
  recA Streptococcus pneumoniae Rx1

56.695

99.153

0.562
  recA Streptococcus pneumoniae D39

56.695

99.153

0.562
  recA Streptococcus pneumoniae TIGR4

56.695

99.153

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

87.006

0.559
  recA Streptococcus mutans UA159

55.932

100

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.514

91.243

0.534
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56

91.808

0.514