Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LK420_RS07225 Genome accession   NZ_CP085949
Coordinates   1500164..1500817 (+) Length   217 a.a.
NCBI ID   WP_080228090.1    Uniprot ID   -
Organism   Haemophilus influenzae strain FDAARGOS_1562     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1495164..1505817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LK420_RS07200 (LK420_07200) - 1495570..1496574 (-) 1005 WP_021034535.1 ornithine carbamoyltransferase -
  LK420_RS07205 (LK420_07205) - 1496989..1497807 (+) 819 WP_021034534.1 Cof-type HAD-IIB family hydrolase -
  LK420_RS07210 (LK420_07210) crcB 1497807..1498193 (+) 387 WP_021034533.1 fluoride efflux transporter CrcB -
  LK420_RS07215 (LK420_07215) recX 1498190..1498648 (-) 459 WP_041175256.1 recombination regulator RecX -
  LK420_RS07220 (LK420_07220) recA 1498728..1499792 (-) 1065 WP_021034531.1 recombinase RecA Machinery gene
  LK420_RS07225 (LK420_07225) sxy/tfoX 1500164..1500817 (+) 654 WP_080228090.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25189.64 Da        Isoelectric Point: 9.8616

>NTDB_id=621515 LK420_RS07225 WP_080228090.1 1500164..1500817(+) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1562]
MNIKDGHIDKVCSLLDLLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELATQLIKLGCEPFTTNELNKRFVL
SQYYALTEQVLRNNMLCRKLIILSIKQIIEQKLEYTLRKLNRLKDLPNLTIKHERALIKVGITDVVMLREIGAENALVEL
KKNGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=621515 LK420_RS07225 WP_080228090.1 1500164..1500817(+) (sxy/tfoX) [Haemophilus influenzae strain FDAARGOS_1562]
ATGAATATAAAGGATGGGCATATAGATAAAGTTTGCTCTTTGCTAGACCTGTTAGTAGGAAATGTTACCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATCTGGCAAAATAAAAAGCTTTATTTACGAGGTG
AAGATGAGCTTGCAACTCAATTAATAAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTACTGAACAGGTTTTACGTAATAATATGTTATGTAGAAAATTGATTATTCTTTCTATTAAACA
GATTATTGAGCAGAAGCTAGAATATACGTTAAGAAAGTTAAATCGATTAAAGGATTTACCCAATTTAACGATTAAACACG
AAAGAGCTTTAATAAAAGTTGGTATTACAGATGTTGTGATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAATGGCAGTGGTGCTACGCTTGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTGAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(19-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

91.244

100

0.912