Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FH508_RS05870 Genome accession   NZ_CP085880
Coordinates   1257491..1258555 (+) Length   354 a.a.
NCBI ID   WP_173477690.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1252491..1263555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS05845 (FH508_0005850) - 1253100..1253357 (+) 258 WP_173477695.1 DUF3243 domain-containing protein -
  FH508_RS05850 (FH508_0005855) - 1253584..1254372 (+) 789 WP_173477694.1 DUF3388 domain-containing protein -
  FH508_RS05855 (FH508_0005860) - 1254398..1255309 (+) 912 WP_173477693.1 RodZ family helix-turn-helix domain-containing protein -
  FH508_RS05860 (FH508_0005865) pgsA 1255358..1255936 (+) 579 WP_173477692.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FH508_RS05865 (FH508_0005870) cinA 1255954..1257213 (+) 1260 WP_173477691.1 competence/damage-inducible protein A Machinery gene
  FH508_RS05870 (FH508_0005875) recA 1257491..1258555 (+) 1065 WP_173477690.1 recombinase RecA Machinery gene
  FH508_RS05875 (FH508_0005880) rny 1259228..1260787 (+) 1560 WP_173477689.1 ribonuclease Y -
  FH508_RS05880 (FH508_0005885) - 1261165..1261860 (+) 696 WP_173477688.1 YveK family protein -
  FH508_RS05885 (FH508_0005890) - 1261934..1262596 (+) 663 WP_173478115.1 CpsD/CapB family tyrosine-protein kinase -
  FH508_RS05890 (FH508_0005895) - 1262636..1263391 (+) 756 WP_217270154.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38230.51 Da        Isoelectric Point: 4.7918

>NTDB_id=621096 FH508_RS05870 WP_173477690.1 1257491..1258555(+) (recA) [Lysinibacillus sp. CD3-6]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVLEEIANK
IRSSYGIAAQSYTIAAHDDEEMDEELMLLLEDEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=621096 FH508_RS05870 WP_173477690.1 1257491..1258555(+) (recA) [Lysinibacillus sp. CD3-6]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAGAAGAATTTCGGTAAAGGCTCTATCATGAAGCT
AGGCGAAAAAACAGATTTAGAAATTGCTACTTCTTCTAGTGGTTCGCTAGCGCTTGATGCAGCATTGGGTGTTGGTGGAT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCAGAATCATCAGGTAAAACAACAGTTGCGCTACATGCTATTGCGGAA
GTACAAGCTAAAGGTGGACAAGCAGCATTTATAGATGCTGAGCATGCATTAGATCCGATTTATGCTCAAAAATTAGGCGT
TAATATTGATGAGCTTTTATTATCACAACCAGATACTGGTGAGCAAGCGCTTGAAATTGCAGAAGCTTTAGTACGTAGTG
GTGCTATTGATATTATCGTTATTGACTCTGTTGCAGCATTAGTACCAAAAGCTGAAATTGAAGGTGACATGGGTGACTCT
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAGCTTTCAGGTGCTATCAATAAATCAAAAACAATCGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGTAATCCAGAAACAACACCTGGTGGTCGTGCGCTGA
AATTCTACAGCTCTGTCCGTTTAGAAGTTCGTCGTGCAGAAGCGATAAAACAAGGTAATGACATTATGGGTAACCGTACA
AAAATTAAAATTGTAAAAAACAAAGTAGCCCCACCATTCCGTACAGCAGAAGTAGATATTATGTACGGTGAAGGTATCTC
AAAAGAAGGCGAAACTGTCGACTTAGGTGTTGAATTAGACATCGTTCAAAAAAGTGGCTCTTGGTACGCTTACGGTGATG
AACGTCTTGGCCAAGGTCGAGAAAATGCAAAACAATATTTAAAAGAAAACCCTGCAGTTTTAGAAGAAATTGCAAATAAA
ATTCGCTCTTCTTATGGCATTGCAGCACAATCGTATACAATTGCAGCACATGATGATGAAGAAATGGATGAAGAGTTAAT
GCTTCTTCTTGAAGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.373

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.09

0.698
  recA Streptococcus mitis SK321

64.82

100

0.661
  recA Streptococcus mitis NCTC 12261

64.543

100

0.658
  recA Streptococcus mutans UA159

63.611

100

0.647
  recA Streptococcus pneumoniae R6

68.182

93.22

0.636
  recA Streptococcus pneumoniae Rx1

68.182

93.22

0.636
  recA Streptococcus pneumoniae D39

68.182

93.22

0.636
  recA Streptococcus pneumoniae TIGR4

68.182

93.22

0.636
  recA Streptococcus pyogenes NZ131

67.683

92.655

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.22

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Helicobacter pylori strain NCTC11637

62.573

96.61

0.605
  recA Acinetobacter baylyi ADP1

61.494

98.305

0.605
  recA Helicobacter pylori 26695

62.281

96.61

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

96.893

0.602
  recA Acinetobacter baumannii D1279779

60.458

98.588

0.596
  recA Glaesserella parasuis strain SC1401

60.172

98.588

0.593
  recA Ralstonia pseudosolanacearum GMI1000

63.914

92.373

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Vibrio cholerae strain A1552

63.75

90.395

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Pseudomonas stutzeri DSM 10701

62.928

90.678

0.571