Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FH508_RS05865 Genome accession   NZ_CP085880
Coordinates   1255954..1257213 (+) Length   419 a.a.
NCBI ID   WP_173477691.1    Uniprot ID   -
Organism   Lysinibacillus sp. CD3-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1250954..1262213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH508_RS05835 (FH508_0005840) yfmH 1251028..1252326 (+) 1299 WP_173477697.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FH508_RS05840 (FH508_0005845) ymfI 1252326..1253054 (+) 729 WP_173477696.1 elongation factor P 5-aminopentanone reductase -
  FH508_RS05845 (FH508_0005850) - 1253100..1253357 (+) 258 WP_173477695.1 DUF3243 domain-containing protein -
  FH508_RS05850 (FH508_0005855) - 1253584..1254372 (+) 789 WP_173477694.1 DUF3388 domain-containing protein -
  FH508_RS05855 (FH508_0005860) - 1254398..1255309 (+) 912 WP_173477693.1 RodZ family helix-turn-helix domain-containing protein -
  FH508_RS05860 (FH508_0005865) pgsA 1255358..1255936 (+) 579 WP_173477692.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FH508_RS05865 (FH508_0005870) cinA 1255954..1257213 (+) 1260 WP_173477691.1 competence/damage-inducible protein A Machinery gene
  FH508_RS05870 (FH508_0005875) recA 1257491..1258555 (+) 1065 WP_173477690.1 recombinase RecA Machinery gene
  FH508_RS05875 (FH508_0005880) rny 1259228..1260787 (+) 1560 WP_173477689.1 ribonuclease Y -
  FH508_RS05880 (FH508_0005885) - 1261165..1261860 (+) 696 WP_173477688.1 YveK family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45369.75 Da        Isoelectric Point: 4.8184

>NTDB_id=621095 FH508_RS05865 WP_173477691.1 1255954..1257213(+) (cinA) [Lysinibacillus sp. CD3-6]
MNAEILAVGSELLLGQISNTNAKFISNQLSELGINVYYHTVVGDNSKRLEEAITIAESRADLIIFSGGLGPTKDDLTKET
IARHLGLDLVIDQVALSYIEQFFAKRGIAMTENNRKQALVLAGSEVLANHHGMAPGMILTKDKRTYILLPGPPKELEPMF
QFEAKPKLGTMLNDGGVIVSHVMRFYGIGEAELEVRVQDILDSQTNPTVAPLAADGEVTLRVTAKAQSEQEAQQLIAGKV
SEIRAIVGDFQYGINDDSLASKTVEMLQDNNLTISAAESLTAGLFQSELAEIPGVGNSLIGGVVTYTEDAKVKQLGIDQQ
LLDTYGIVSSECAAAMASAVRERFGTNIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEEPITYLLHLSGMRNTNRLRAVK
FTFHYLMQQLEERGYIKRF

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=621095 FH508_RS05865 WP_173477691.1 1255954..1257213(+) (cinA) [Lysinibacillus sp. CD3-6]
ATGAATGCTGAAATCCTTGCAGTTGGCTCAGAGTTATTACTTGGACAAATTTCAAATACAAATGCGAAATTTATTTCTAA
TCAGCTTTCTGAATTAGGCATCAATGTCTATTATCATACGGTTGTTGGGGATAATTCAAAACGTTTAGAGGAAGCAATCA
CTATAGCGGAATCGCGCGCTGATCTTATCATTTTTTCAGGTGGTTTAGGTCCTACAAAGGATGATTTAACGAAGGAGACC
ATTGCTCGTCATCTTGGGCTAGATCTTGTTATCGATCAAGTTGCATTGTCATACATTGAGCAATTTTTTGCTAAACGAGG
CATCGCAATGACAGAAAATAATCGTAAGCAGGCGCTAGTATTAGCAGGTAGCGAGGTGCTAGCTAATCATCATGGTATGG
CTCCAGGGATGATATTGACAAAGGATAAACGTACCTACATTTTACTTCCTGGGCCGCCAAAAGAACTGGAGCCAATGTTC
CAATTCGAAGCAAAGCCAAAGCTTGGTACAATGTTAAATGATGGCGGAGTCATCGTGTCTCATGTAATGCGCTTTTATGG
CATTGGAGAAGCCGAGCTAGAAGTGCGTGTGCAGGATATATTAGATTCACAAACAAATCCGACAGTTGCTCCACTCGCTG
CTGATGGAGAAGTAACTTTACGTGTCACAGCTAAGGCGCAATCAGAACAGGAAGCTCAACAGCTGATTGCTGGTAAAGTG
TCGGAGATTCGTGCTATTGTAGGAGACTTCCAATATGGCATTAATGATGATTCACTTGCCTCAAAAACGGTAGAAATGTT
GCAAGATAATAATTTAACGATTTCTGCAGCCGAAAGCTTAACAGCAGGCTTATTTCAATCAGAGCTAGCTGAGATTCCAG
GTGTTGGCAATTCACTTATCGGAGGCGTAGTTACCTATACAGAAGATGCTAAAGTAAAGCAGCTAGGTATCGACCAACAA
CTATTAGATACTTATGGTATTGTAAGCAGTGAATGTGCTGCGGCAATGGCTAGCGCCGTGCGGGAAAGATTCGGCACGAA
TATTGGTATTGGGTTAACAGGAGCGGCTGGTCCTACAGCACATGACCATCAGCCAGTTGGAACTGTCTGGATTGGGATTG
CTATAGGTGATGAAGAGCCAATAACATATTTACTGCATTTATCAGGTATGCGCAATACAAATCGTTTACGTGCAGTTAAA
TTTACATTCCATTATTTAATGCAGCAATTAGAAGAACGAGGTTATATAAAACGCTTTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.184

98.329

0.513
  cinA Streptococcus mitis SK321

46.475

91.408

0.425
  cinA Streptococcus mitis NCTC 12261

45.953

91.408

0.42
  cinA Streptococcus pneumoniae TIGR4

45.953

91.408

0.42
  cinA Streptococcus pneumoniae Rx1

45.953

91.408

0.42
  cinA Streptococcus pneumoniae R6

45.953

91.408

0.42
  cinA Streptococcus mutans UA159

42.271

98.807

0.418
  cinA Streptococcus pneumoniae D39

45.692

91.408

0.418