Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HP399_RS13440 Genome accession   NZ_CP085876
Coordinates   2879400..2880458 (+) Length   352 a.a.
NCBI ID   WP_017249260.1    Uniprot ID   A0A517I495
Organism   Brevibacillus sp. DP1.3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2874400..2885458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS13425 (HP399_013430) pgsA 2875710..2876285 (+) 576 WP_007719166.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HP399_RS13430 (HP399_013435) cinA 2876393..2877637 (+) 1245 WP_173617469.1 competence/damage-inducible protein A Machinery gene
  HP399_RS13435 (HP399_013440) - 2877645..2879234 (+) 1590 WP_173617470.1 DEAD/DEAH box helicase -
  HP399_RS13440 (HP399_013445) recA 2879400..2880458 (+) 1059 WP_017249260.1 recombinase RecA Machinery gene
  HP399_RS13445 (HP399_013450) - 2880528..2881169 (+) 642 WP_173617471.1 RecX family transcriptional regulator -
  HP399_RS13450 (HP399_013455) rny 2881443..2882984 (+) 1542 WP_007719154.1 ribonuclease Y -
  HP399_RS13455 (HP399_013460) - 2883094..2883888 (+) 795 WP_007719153.1 TIGR00282 family metallophosphoesterase -
  HP399_RS13460 (HP399_013465) spoVS 2884007..2884267 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -
  HP399_RS13465 (HP399_013470) - 2884375..2885313 (+) 939 WP_173617472.1 dipeptidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37796.96 Da        Isoelectric Point: 4.9005

>NTDB_id=621060 HP399_RS13440 WP_017249260.1 2879400..2880458(+) (recA) [Brevibacillus sp. DP1.3A]
MSDRRAALESALRQIEKQFGKGSIMKLGEVSNIQISTASSGALALDIALGVGGFPRGRIVEIYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAAKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDILGSKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSILDIGSEIDVVQKSGAWYSFNEERLGQGRENSKVFLKENPHIASQIETK
VREYFSLNPGSVPEGEAVNDPEQDEEPTFDLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=621060 HP399_RS13440 WP_017249260.1 2879400..2880458(+) (recA) [Brevibacillus sp. DP1.3A]
TTGTCAGATCGTCGCGCAGCTTTGGAGAGTGCATTGCGTCAAATAGAAAAGCAATTCGGAAAAGGTTCCATTATGAAGTT
GGGGGAAGTATCCAACATCCAGATTTCTACGGCTTCTAGCGGTGCACTTGCTCTAGATATCGCACTTGGTGTGGGTGGGT
TCCCACGCGGACGGATTGTTGAGATTTACGGACCAGAGTCTTCTGGTAAAACAACAGTAGCGCTTCATGCCATCGCAGAA
GTGCAAAGACAGGGTGGACAAGCTGCTTTTATCGATGCTGAGCATGCCTTGGATCCGGTTTACGCTGCTAAGCTGGGTGT
GAACATCGATGAATTGCTGTTGTCCCAACCAGACACTGGTGAGCAAGCTTTGGAGATCGCGGAAGCACTGGTGCGTTCTG
GTGCGGTAGACATTATCGTAGTCGACTCCGTTGCGGCACTCGTGCCAAAAGCAGAGATCGAAGGCGAGATGGGAGATTCC
CACGTAGGTTTGCAAGCGCGCTTGATGTCCCAAGCACTTCGTAAGCTGTCTGGTGCCATCAACAAGTCCAAAACGATTGC
GATCTTCATCAACCAGCTTCGTGAAAAAGTGGGAGTTATGTTTGGTAACCCGGAAACAACTCCAGGTGGACGCGCTTTGA
AGTTCTACGCGAGTGTTCGTTTGGATGTTCGTAAAGCGGAATCTATCAAAGTCGGCAACGACATTTTGGGTAGCAAGACA
AAGATCAAAGTTGTCAAAAATAAAGTGGCTCCACCATTTAAGGTTGCAGAAGTGGACATCATGTACGGTGAAGGTATTTC
CAGAGAAGGTAGCATTCTCGACATCGGTTCTGAGATTGATGTCGTGCAAAAGAGTGGTGCTTGGTATTCCTTCAATGAAG
AGCGACTCGGCCAAGGTAGAGAAAATTCGAAGGTTTTCCTGAAGGAAAATCCGCACATTGCATCGCAGATTGAAACAAAA
GTGCGCGAATACTTCAGCCTAAACCCTGGTTCTGTTCCAGAAGGTGAAGCAGTAAATGACCCAGAGCAAGATGAAGAGCC
TACATTTGATCTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A517I495

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.325

94.318

0.767
  recA Latilactobacillus sakei subsp. sakei 23K

71.988

94.318

0.679
  recA Streptococcus pneumoniae Rx1

67.139

100

0.673
  recA Streptococcus pneumoniae D39

67.139

100

0.673
  recA Streptococcus pneumoniae R6

67.139

100

0.673
  recA Streptococcus pneumoniae TIGR4

67.139

100

0.673
  recA Streptococcus mitis SK321

65.289

100

0.673
  recA Streptococcus mitis NCTC 12261

66.289

100

0.665
  recA Streptococcus mutans UA159

65.537

100

0.659
  recA Streptococcus pyogenes NZ131

70.031

92.898

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.485

93.75

0.642
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae MS11

62.717

98.295

0.616
  recA Neisseria gonorrhoeae strain FA1090

62.717

98.295

0.616
  recA Ralstonia pseudosolanacearum GMI1000

66.361

92.898

0.616
  recA Vibrio cholerae strain A1552

65.749

92.898

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.749

92.898

0.611
  recA Glaesserella parasuis strain SC1401

61.318

99.148

0.608
  recA Acinetobacter baylyi ADP1

60.571

99.432

0.602
  recA Acinetobacter baumannii D1279779

60

99.432

0.597
  recA Pseudomonas stutzeri DSM 10701

60.641

97.443

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

91.193

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

92.898

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.909

0.563
  recA Helicobacter pylori 26695

59.337

94.318

0.56
  recA Helicobacter pylori strain NCTC11637

59.036

94.318

0.557