Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HP399_RS13430 Genome accession   NZ_CP085876
Coordinates   2876393..2877637 (+) Length   414 a.a.
NCBI ID   WP_173617469.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2871393..2882637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS13405 (HP399_013410) - 2872188..2872457 (+) 270 WP_173617466.1 DUF3243 domain-containing protein -
  HP399_RS13410 (HP399_013415) - 2872566..2873345 (+) 780 WP_016743377.1 YmfK family protein -
  HP399_RS13415 (HP399_013420) - 2873358..2874251 (+) 894 WP_173617467.1 helix-turn-helix domain-containing protein -
  HP399_RS13420 (HP399_013425) rimO 2874363..2875709 (+) 1347 WP_173617468.1 30S ribosomal protein S12 methylthiotransferase RimO -
  HP399_RS13425 (HP399_013430) pgsA 2875710..2876285 (+) 576 WP_007719166.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HP399_RS13430 (HP399_013435) cinA 2876393..2877637 (+) 1245 WP_173617469.1 competence/damage-inducible protein A Machinery gene
  HP399_RS13435 (HP399_013440) - 2877645..2879234 (+) 1590 WP_173617470.1 DEAD/DEAH box helicase -
  HP399_RS13440 (HP399_013445) recA 2879400..2880458 (+) 1059 WP_017249260.1 recombinase RecA Machinery gene
  HP399_RS13445 (HP399_013450) - 2880528..2881169 (+) 642 WP_173617471.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44979.74 Da        Isoelectric Point: 5.8338

>NTDB_id=621059 HP399_RS13430 WP_173617469.1 2876393..2877637(+) (cinA) [Brevibacillus sp. DP1.3A]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVIFTGGLGPTQDDLTKET
LAGHVGIGLETNPEAMERIEKFFLQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSELYPMV
ENYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEEKLLDLIEKQENPTIAPYAKEFEVTLRITARAATVEEGEALILPVE
KEILSRVGQYMYGMGENSSLHDVLVSKLKKRNETIACAESCTGGAIASLITSVPGSSQVFRGGVVCYTNEVKNQLLEVPH
SILQTDGAVSEKTAQLLAEHVREKLGATYGISITGVAGPDPSEGKPVGLVYVGIAAEGMPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=621059 HP399_RS13430 WP_173617469.1 2876393..2877637(+) (cinA) [Brevibacillus sp. DP1.3A]
ATGAGAGCGGAGATTATCGCGGTAGGTACTGAGCTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTTTACTTTCATACCGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGACGATCTGATCTCGTCATTTTCACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
TTGGCGGGGCATGTAGGCATTGGATTGGAAACGAATCCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTTGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCTGGCAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCTGGACCACCAAGCGAGCTGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACCGATTTGCTTCCCGAAAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGCGAATCCGCTTTGGAGGAAAAATTGCTCGATCTGATCGAAAAGCAGGAAAATCCAACGATCGCGCCATACGCCA
AGGAATTCGAAGTAACGCTGCGGATTACGGCAAGAGCTGCTACAGTCGAAGAAGGAGAAGCCCTAATCTTGCCTGTAGAA
AAAGAAATACTCAGCCGTGTTGGCCAGTATATGTACGGGATGGGCGAGAACTCGTCGCTGCATGATGTGCTGGTTTCTAA
GCTGAAAAAGAGAAATGAGACGATCGCTTGTGCAGAAAGCTGCACAGGAGGAGCAATTGCCTCGTTGATTACTTCTGTAC
CAGGAAGCTCGCAAGTGTTTCGTGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAATCAGCTGCTCGAAGTACCTCAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACAGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGAGC
TACTTATGGTATTTCTATTACGGGAGTGGCTGGACCAGATCCTTCCGAGGGTAAGCCTGTTGGCCTTGTCTACGTAGGGA
TCGCAGCAGAAGGAATGCCCACAGTTGTAAAAGAGCTGCGCCTTGCCGGAAGAAGGCATGCAATCGTTGGACGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.816

99.758

0.517
  cinA Streptococcus mitis SK321

48.762

97.585

0.476
  cinA Streptococcus mitis NCTC 12261

48.515

97.585

0.473
  cinA Streptococcus pneumoniae TIGR4

48.267

97.585

0.471
  cinA Streptococcus pneumoniae Rx1

48.02

97.585

0.469
  cinA Streptococcus pneumoniae R6

48.02

97.585

0.469
  cinA Streptococcus pneumoniae D39

47.772

97.585

0.466
  cinA Streptococcus mutans UA159

46.115

96.377

0.444
  cinA Streptococcus suis isolate S10

40.759

95.411

0.389