Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJY22_RS11905 Genome accession   NZ_CP085843
Coordinates   2605778..2606821 (-) Length   347 a.a.
NCBI ID   WP_005393872.1    Uniprot ID   A0AAE4S8L2
Organism   Vibrio diabolicus strain NV27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600778..2611821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS11890 (LJY22_11880) - 2601057..2602244 (-) 1188 WP_005393869.1 aspartate kinase -
  LJY22_RS11895 (LJY22_11885) alaS 2602457..2605039 (-) 2583 WP_005393870.1 alanine--tRNA ligase -
  LJY22_RS11900 (LJY22_11890) recX 2605182..2605649 (-) 468 WP_065646116.1 recombination regulator RecX -
  LJY22_RS11905 (LJY22_11895) recA 2605778..2606821 (-) 1044 WP_005393872.1 recombinase RecA Machinery gene
  LJY22_RS11910 (LJY22_11900) pncC 2607022..2607504 (-) 483 WP_104974807.1 nicotinamide-nucleotide amidase -
  LJY22_RS11915 (LJY22_11905) mutS 2607589..2610150 (+) 2562 WP_006743294.1 DNA mismatch repair protein MutS -
  LJY22_RS11920 (LJY22_11910) rpoS 2610232..2611218 (-) 987 WP_005393877.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37290.75 Da        Isoelectric Point: 5.0618

>NTDB_id=620813 LJY22_RS11905 WP_005393872.1 2605778..2606821(-) (recA) [Vibrio diabolicus strain NV27]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLREHPEVAKTIDT
KLREMLLAPALAEAPEAGEAPEQAEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=620813 LJY22_RS11905 WP_005393872.1 2605778..2606821(-) (recA) [Vibrio diabolicus strain NV27]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGAGCAATGGACGTAGAAACCATCTCAACAGGCTCTCTTTCTCTTGATATCGCTTTGGGTGCAGGTG
GTCTGCCAATGGGTCGTATCGTAGAAGTCTACGGTCCAGAATCTTCAGGTAAAACAACACTAACGCTTGAGCTTATCGCT
GCTGCGCAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCAGAGCACGCTCTGGATCCTGTCTACGCGAAGAAACTTGG
TGTTGATATCGATGCGCTCTTGGTTTCTCAGCCAGACACTGGTGAGCAAGCACTAGAGATTTGTGATGCACTAGCTCGCT
CTGGCGCTATCGACGTAATGGTTGTTGACTCAGTTGCGGCGCTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACAGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACGACCACGGGTGGTAATGCAC
TTAAATTCTACGCTTCTGTTCGTCTTGATATTCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTCGTTGGTAACGAA
ACTCGCATCAAAGTGGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCCAATACGCAAATCATGTACGGTCAAGGCTT
TAACCGCGAAGGTGAGCTGGTAGATCTAGGCGTGAAGCACAAACTGGTTGAAAAAGCTGGTGCTTGGTACAGCTACCAAG
GCGATAAGATTGGTCAAGGTAAAGCGAACGCGTGCAACTACCTACGTGAGCATCCTGAAGTGGCTAAAACCATCGATACT
AAATTGCGTGAAATGTTGTTAGCGCCAGCCCTTGCGGAAGCTCCTGAAGCAGGCGAGGCGCCTGAGCAAGCTGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

94.529

94.813

0.896
  recA Vibrio cholerae O1 biovar El Tor strain E7946

94.529

94.813

0.896
  recA Acinetobacter baylyi ADP1

71.594

99.424

0.712
  recA Acinetobacter baumannii D1279779

74.924

94.236

0.706
  recA Pseudomonas stutzeri DSM 10701

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

70.37

93.372

0.657
  recA Neisseria gonorrhoeae MS11

64.756

100

0.651
  recA Neisseria gonorrhoeae MS11

64.756

100

0.651
  recA Neisseria gonorrhoeae strain FA1090

64.756

100

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.418

89.625

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.184

98.847

0.585
  recA Helicobacter pylori strain NCTC11637

61.774

94.236

0.582
  recA Helicobacter pylori 26695

61.468

94.236

0.579
  recA Streptococcus pneumoniae D39

62.229

93.084

0.579
  recA Streptococcus pneumoniae TIGR4

62.229

93.084

0.579
  recA Streptococcus pneumoniae R6

62.229

93.084

0.579
  recA Streptococcus pneumoniae Rx1

62.229

93.084

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.581

96.254

0.573
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Streptococcus pyogenes NZ131

60.923

93.66

0.571
  recA Streptococcus mitis NCTC 12261

61.3

93.084

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.159

95.965

0.568
  recA Streptococcus mutans UA159

60.308

93.66

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.372

93.084

0.562