Detailed information NTG0620815

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LJY22_RS11920
• Genome accession: NZ_CP085843
• Coordinates: 2610232..2611218 (-)
• Length: 328 a.a.
• NCBI ID: WP_005393877.1
• Uniprot ID: A0AAE4M7L2
• Organism: Vibrio diabolicus strain NV27
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2605232..2616218

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJY22_RS11905 (LJY22_11895)	recA	2605778..2606821 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
LJY22_RS11910 (LJY22_11900)	pncC	2607022..2607504 (-)	483	WP_104974807.1	nicotinamide-nucleotide amidase	-
LJY22_RS11915 (LJY22_11905)	mutS	2607589..2610150 (+)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
LJY22_RS11920 (LJY22_11910)	rpoS	2610232..2611218 (-)	987	WP_005393877.1	RNA polymerase sigma factor RpoS	Regulator
LJY22_RS11925 (LJY22_11915)	-	2611299..2612222 (-)	924	WP_006743295.1	peptidoglycan DD-metalloendopeptidase family protein	-
LJY22_RS11930 (LJY22_11920)	-	2612236..2612862 (-)	627	WP_005393881.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LJY22_RS11935 (LJY22_11925)	surE	2612862..2613638 (-)	777	WP_257896955.1	5'/3'-nucleotidase SurE	-
LJY22_RS11940 (LJY22_11930)	truD	2613638..2614681 (-)	1044	WP_257896956.1	tRNA pseudouridine(13) synthase TruD	-
LJY22_RS11945 (LJY22_11935)	ispF	2614728..2615204 (-)	477	WP_005393886.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LJY22_RS11950 (LJY22_11940)	ispD	2615222..2615926 (-)	705	WP_257896957.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LJY22_RS11955 (LJY22_11945)	ftsB	2615928..2616209 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37384.30 Da
• Isoelectric Point: 4.7299

>NTDB_id=620815 LJY22_RS11920 WP_005393877.1 2610232..2611218(-) (rpoS) [Vibrio diabolicus strain NV27]
MSISNTVTKVEEFAFDNASVKTIDNELEKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=620815 LJY22_RS11920 WP_005393877.1 2610232..2611218(-) (rpoS) [Vibrio diabolicus strain NV27]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAAATCATCATCCACAGAAAGCAAAACGGCTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGACGCAACTC
AGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCTCTGCGT
GGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTCAAGATCTCTCGTCGATATAGTAATCG
CGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCTGAGCGTG
GTTTCCGCTTCTCTACTTATGCGACTTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACGATC
CGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCACGA
ACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGTCTCAATGAGCGTA
TCAGTTCTGTCGACACGCCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAACTCCGAT
CCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACAAAAAGA
AGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTTTGACAC
GTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAATATGGAA
AACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.851