Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT35_RS08425 Genome accession   NZ_CP085720
Coordinates   1691076..1692122 (+) Length   348 a.a.
NCBI ID   WP_127759842.1    Uniprot ID   -
Organism   Peribacillus asahii strain KF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686076..1697122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS08400 (LIT35_08410) - 1686280..1686540 (+) 261 WP_127759838.1 DUF3243 domain-containing protein -
  LIT35_RS08405 (LIT35_08415) - 1687131..1687922 (+) 792 WP_119116500.1 DUF3388 domain-containing protein -
  LIT35_RS08410 (LIT35_08420) - 1687940..1688842 (+) 903 WP_127759839.1 helix-turn-helix domain-containing protein -
  LIT35_RS08415 (LIT35_08425) pgsA 1688896..1689480 (+) 585 WP_127759840.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT35_RS08420 (LIT35_08430) cinA 1689505..1690746 (+) 1242 WP_127759841.1 competence/damage-inducible protein A Machinery gene
  LIT35_RS08425 (LIT35_08435) recA 1691076..1692122 (+) 1047 WP_127759842.1 recombinase RecA Machinery gene
  LIT35_RS08430 (LIT35_08440) rny 1692417..1693976 (+) 1560 WP_127762496.1 ribonuclease Y -
  LIT35_RS08435 (LIT35_08445) - 1694078..1694875 (+) 798 WP_127759843.1 TIGR00282 family metallophosphoesterase -
  LIT35_RS08440 (LIT35_08450) spoVS 1695037..1695297 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -
  LIT35_RS08445 (LIT35_08455) - 1695419..1696339 (+) 921 WP_127759844.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37800.87 Da        Isoelectric Point: 4.7801

>NTDB_id=619622 LIT35_RS08425 WP_127759842.1 1691076..1692122(+) (recA) [Peribacillus asahii strain KF4]
MSDRQAALEMALKQIEKQFGKGSIMKMGEQTDRKISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQANGGTAAFIDAEHALDPDYSQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDVVGNKT
KVKVVKNKVAPPFRQAEVDIMYGEGISREGEIIDMGSDLDIVQKSGSWYSYNDERLGQGRENAKLFLKENKDVAKEIAQK
IRDHYNLDGEHVLPEGADDEELLPELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=619622 LIT35_RS08425 WP_127759842.1 1691076..1692122(+) (recA) [Peribacillus asahii strain KF4]
ATGAGTGATCGTCAAGCGGCGTTAGAAATGGCGTTAAAGCAGATTGAAAAACAATTCGGAAAAGGTTCTATTATGAAGAT
GGGAGAACAAACAGACCGAAAGATTTCTACTATTTCAAGTGGTTCTCTTGCTTTGGATGTAGCCCTTGGAGTAGGTGGGT
ATCCCCGTGGAAGAATTATTGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACAGTGGCTCTTCATGCTATTGCAGAG
GTACAAGCTAATGGAGGCACAGCTGCGTTTATTGATGCCGAACATGCGCTCGATCCAGACTATTCACAGAAGCTTGGTGT
AAATATTGATGAATTGCTGTTATCTCAACCAGATACAGGGGAGCAAGGACTTGAAATCGCGGAAGCATTAGTACGAAGTG
GTGCAGTCGATATTATTGTTATTGATTCGGTTGCTGCATTGGTGCCAAAAGCAGAAATCGAAGGGGAAATGGGTGACTCT
CACGTAGGTCTTCAAGCGCGTCTGATGTCGCAAGCGCTTAGAAAATTATCTGGGGCGATTAATAAATCGAATACGATTGC
GATCTTTATTAACCAAATCCGTGAAAAAGTCGGTATTATGTTCGGAAACCCCGAAACAACTCCAGGAGGCCGTGCGCTTA
AGTTTTACTCAACTGTCCGTCTGGAAGTACGTCGTGCTGAGCAATTAAAACAAGGGAATGACGTAGTCGGAAATAAAACA
AAAGTAAAAGTTGTGAAAAATAAAGTAGCTCCTCCATTCCGTCAAGCGGAAGTTGACATTATGTATGGAGAAGGGATTTC
ACGTGAAGGTGAAATTATCGATATGGGATCTGACTTGGATATCGTGCAAAAAAGTGGCTCATGGTATTCTTATAATGATG
AGCGTCTTGGACAAGGCCGTGAAAACGCGAAGCTTTTCTTAAAAGAAAATAAAGATGTTGCAAAAGAAATTGCTCAAAAA
ATTCGCGATCATTACAATTTAGACGGAGAACATGTACTGCCAGAAGGAGCAGACGATGAGGAGCTGCTACCTGAACTTCT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.186

95.69

0.825
  recA Latilactobacillus sakei subsp. sakei 23K

73.121

99.425

0.727
  recA Streptococcus mitis SK321

68.06

96.264

0.655
  recA Streptococcus pneumoniae D39

67.857

96.552

0.655
  recA Streptococcus pneumoniae Rx1

67.857

96.552

0.655
  recA Streptococcus pneumoniae R6

67.857

96.552

0.655
  recA Streptococcus pneumoniae TIGR4

67.857

96.552

0.655
  recA Streptococcus mitis NCTC 12261

67.56

96.552

0.652
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus pyogenes NZ131

67.89

93.966

0.638
  recA Neisseria gonorrhoeae MS11

65.294

97.701

0.638
  recA Neisseria gonorrhoeae strain FA1090

65.294

97.701

0.638
  recA Neisseria gonorrhoeae MS11

65.294

97.701

0.638
  recA Lactococcus lactis subsp. cremoris KW2

66.364

94.828

0.629
  recA Ralstonia pseudosolanacearum GMI1000

67.802

92.816

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.891

100

0.621
  recA Vibrio cholerae strain A1552

61.891

100

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.701

0.612
  recA Helicobacter pylori 26695

63.363

95.69

0.606
  recA Helicobacter pylori strain NCTC11637

63.363

95.69

0.606
  recA Acinetobacter baumannii D1279779

60.29

99.138

0.598
  recA Pseudomonas stutzeri DSM 10701

65

91.954

0.598
  recA Glaesserella parasuis strain SC1401

61.31

96.552

0.592
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.966

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.954

0.555