Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT35_RS08420 Genome accession   NZ_CP085720
Coordinates   1689505..1690746 (+) Length   413 a.a.
NCBI ID   WP_127759841.1    Uniprot ID   A0A3T0KPR6
Organism   Peribacillus asahii strain KF4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1684505..1695746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS08395 (LIT35_08405) - 1685033..1685758 (+) 726 WP_127759837.1 SDR family oxidoreductase -
  LIT35_RS08400 (LIT35_08410) - 1686280..1686540 (+) 261 WP_127759838.1 DUF3243 domain-containing protein -
  LIT35_RS08405 (LIT35_08415) - 1687131..1687922 (+) 792 WP_119116500.1 DUF3388 domain-containing protein -
  LIT35_RS08410 (LIT35_08420) - 1687940..1688842 (+) 903 WP_127759839.1 helix-turn-helix domain-containing protein -
  LIT35_RS08415 (LIT35_08425) pgsA 1688896..1689480 (+) 585 WP_127759840.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT35_RS08420 (LIT35_08430) cinA 1689505..1690746 (+) 1242 WP_127759841.1 competence/damage-inducible protein A Machinery gene
  LIT35_RS08425 (LIT35_08435) recA 1691076..1692122 (+) 1047 WP_127759842.1 recombinase RecA Machinery gene
  LIT35_RS08430 (LIT35_08440) rny 1692417..1693976 (+) 1560 WP_127762496.1 ribonuclease Y -
  LIT35_RS08435 (LIT35_08445) - 1694078..1694875 (+) 798 WP_127759843.1 TIGR00282 family metallophosphoesterase -
  LIT35_RS08440 (LIT35_08450) spoVS 1695037..1695297 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45547.00 Da        Isoelectric Point: 5.1104

>NTDB_id=619621 LIT35_RS08420 WP_127759841.1 1689505..1690746(+) (cinA) [Peribacillus asahii strain KF4]
MDAEIIAVGSELLLGQIVNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIELAESRADLIVFTGGLGPTKDDLTKET
IARHLGKQLVFDEEALRSIEDYFSKKGRIMTENNKKQALVLEGCHVLRNDHGMAPGMVLTQAGITYMLLPGPPKEMEPMF
LSYGYQQLQNRLQSKERIESKVLRFYGIGEALLETEIEDLLENQTNPTIAPLAADGEVTLRITAKGESKEKCEALISQVE
AEILRRVGQFYYGSNQTSLIQELVKELTKRDMTIAVAESLTGGMFQEQLTTIPGVSAIFKGGVVSYATAVKAKMLHVSEA
TIANYGVVSEQCALEMAANIRTELESDVGISFTGVAGPEEQEGKPAGTVFIGISYRDGRSHVQSLNLSGSRAQNRIRTVK
YGCHYLLRDIQQM

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=619621 LIT35_RS08420 WP_127759841.1 1689505..1690746(+) (cinA) [Peribacillus asahii strain KF4]
ATGGATGCAGAAATTATTGCTGTTGGTTCCGAGCTATTACTAGGGCAAATTGTGAATACAAATGGTCGTTTTTTATCACA
GCAGTTTGCTGAAATGGGGATTAATGTTTTTTATCATACGGTCGTTGGCGATAATGATCGTCGCTTGCAGCAAGCTATTG
AATTAGCTGAGTCCCGTGCTGATTTAATTGTATTTACAGGTGGGCTTGGTCCGACGAAAGATGATTTAACGAAAGAAACA
ATCGCCCGTCATTTAGGGAAACAGCTCGTGTTTGATGAAGAAGCTCTTCGTTCTATTGAAGATTATTTCAGTAAAAAGGG
TCGGATAATGACAGAAAATAATAAAAAGCAAGCCCTTGTTTTAGAAGGCTGTCATGTCCTAAGAAATGATCATGGAATGG
CTCCAGGAATGGTGTTAACTCAAGCGGGCATTACATACATGTTATTACCTGGTCCTCCAAAAGAGATGGAACCGATGTTT
TTAAGCTACGGCTATCAACAATTACAAAATAGACTTCAAAGTAAGGAGCGAATTGAATCAAAGGTTCTTCGCTTTTACGG
CATAGGAGAAGCGTTATTAGAAACAGAAATTGAGGACTTGCTAGAGAATCAAACAAATCCAACGATTGCACCGTTAGCGG
CAGACGGTGAAGTAACATTACGGATTACTGCTAAAGGTGAATCAAAGGAAAAATGCGAAGCGCTTATTTCACAAGTAGAA
GCTGAAATTCTCCGCCGTGTTGGTCAATTTTATTATGGCAGCAATCAAACGTCGCTTATTCAAGAATTAGTAAAAGAGTT
AACAAAGCGTGATATGACCATTGCTGTTGCCGAAAGCTTAACAGGTGGGATGTTTCAAGAACAATTAACGACCATTCCTG
GTGTTAGCGCAATATTTAAAGGCGGCGTTGTTAGCTATGCAACTGCAGTAAAAGCAAAAATGCTTCATGTAAGTGAAGCG
ACGATTGCAAACTATGGTGTTGTTAGCGAACAATGTGCCCTTGAAATGGCAGCTAATATACGTACGGAGCTGGAGAGCGA
TGTCGGAATTAGCTTCACTGGTGTAGCAGGGCCAGAGGAACAGGAGGGTAAACCAGCAGGTACAGTTTTCATTGGTATCT
CGTATCGAGATGGTCGTTCTCATGTTCAATCTTTAAACCTTTCTGGAAGTAGGGCACAAAATAGGATTCGGACTGTCAAA
TATGGCTGTCATTATTTATTAAGAGATATACAGCAAATGTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0KPR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.366

99.274

0.55
  cinA Streptococcus mitis SK321

46.667

98.063

0.458
  cinA Streptococcus mitis NCTC 12261

46.42

98.063

0.455
  cinA Streptococcus pneumoniae TIGR4

46.42

98.063

0.455
  cinA Streptococcus pneumoniae Rx1

45.926

98.063

0.45
  cinA Streptococcus pneumoniae R6

45.926

98.063

0.45
  cinA Streptococcus pneumoniae D39

45.679

98.063

0.448
  cinA Streptococcus mutans UA159

42.928

97.579

0.419
  cinA Streptococcus suis isolate S10

38.791

96.126

0.373