Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIS76_RS08145 Genome accession   NZ_CP085717
Coordinates   1642385..1643425 (+) Length   346 a.a.
NCBI ID   WP_252294370.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637385..1648425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS08120 (LIS76_08125) - 1637593..1637853 (+) 261 WP_252294362.1 DUF3243 domain-containing protein -
  LIS76_RS08125 (LIS76_08130) - 1638444..1639235 (+) 792 WP_252294364.1 DUF3388 domain-containing protein -
  LIS76_RS08130 (LIS76_08135) - 1639253..1640155 (+) 903 WP_252294366.1 helix-turn-helix domain-containing protein -
  LIS76_RS08135 (LIS76_08140) pgsA 1640209..1640793 (+) 585 WP_252290133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS76_RS08140 (LIS76_08145) cinA 1640818..1642059 (+) 1242 WP_252294368.1 competence/damage-inducible protein A Machinery gene
  LIS76_RS08145 (LIS76_08150) recA 1642385..1643425 (+) 1041 WP_252294370.1 recombinase RecA Machinery gene
  LIS76_RS08150 (LIS76_08155) rny 1643720..1645279 (+) 1560 WP_252295422.1 ribonuclease Y -
  LIS76_RS08155 (LIS76_08160) - 1645381..1646178 (+) 798 WP_252294372.1 TIGR00282 family metallophosphoesterase -
  LIS76_RS08160 (LIS76_08165) spoVS 1646340..1646600 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -
  LIS76_RS08165 (LIS76_08170) - 1646722..1647642 (+) 921 WP_286676620.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37543.73 Da        Isoelectric Point: 4.9093

>NTDB_id=619576 LIS76_RS08145 WP_252294370.1 1642385..1643425(+) (recA) [Peribacillus asahii strain CMF4]
MSDRQAALEMALKQIEKQFGKGSIMKMGEQTDRKISTISSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQANGGTAAFIDAEHALDPAYSQKLGVNVDELLLSQPDTAEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSNTIAIFINQVREKIGIMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KVKIVKNKVAPPFRQAEVDIMYGEGISREGEIIDMGADLDIVEKSGSWYAYNGERLGQGRENAKLFLKENKDIAKEISQK
IRDHYNLDGEHVLPEGADDEELLPLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=619576 LIS76_RS08145 WP_252294370.1 1642385..1643425(+) (recA) [Peribacillus asahii strain CMF4]
ATGAGTGATCGTCAAGCGGCATTAGAAATGGCGTTAAAGCAGATTGAAAAGCAATTCGGAAAAGGTTCTATTATGAAGAT
GGGAGAACAAACAGACCGAAAGATTTCTACTATTTCAAGTGGTTCACTTGCTTTGGATATAGCTCTTGGAGTGGGCGGGT
ATCCACGTGGAAGAATTATTGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACAGTGGCTCTTCATGCCATTGCGGAA
GTACAAGCTAATGGCGGCACAGCTGCGTTTATTGATGCTGAACATGCGCTCGACCCGGCTTATTCACAGAAGCTTGGTGT
AAATGTTGATGAATTGCTATTATCTCAACCAGATACGGCTGAGCAAGGGCTCGAAATCGCTGAAGCCTTAGTACGAAGTG
GTGCAGTCGATATTATCGTTATTGACTCGGTTGCTGCATTGGTACCAAAAGCAGAAATCGAAGGGGAAATGGGTGACTCT
CACATGGGTCTTCAAGCGCGCCTTATGTCCCAAGCTCTTAGAAAATTATCCGGTGCAATTAATAAATCGAATACAATCGC
GATTTTTATTAACCAAGTTCGTGAAAAAATCGGTATTATGTTCGGAAATCCCGAAACAACTCCAGGTGGACGTGCGCTTA
AGTTTTACTCAACTGTTCGTCTGGAAGTACGTCGTGCTGAGCAATTAAAACAAGGTAATGAAATAGTGGGAAATAAAACA
AAAGTAAAAATTGTTAAAAACAAAGTGGCACCTCCATTCCGTCAAGCAGAAGTGGATATTATGTATGGAGAAGGAATTTC
ACGTGAAGGTGAAATAATTGACATGGGAGCTGACTTGGATATCGTCGAAAAAAGTGGTTCATGGTATGCCTATAATGGTG
AGCGCCTCGGACAAGGCCGTGAAAACGCGAAGCTTTTCTTAAAAGAAAATAAAGACATTGCAAAAGAGATTTCTCAAAAA
ATTCGCGATCATTATAATTTAGACGGGGAACATGTACTGCCAGAAGGAGCAGACGATGAGGAGCTACTACCTCTTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.483

96.243

0.803
  recA Latilactobacillus sakei subsp. sakei 23K

70.605

100

0.708
  recA Streptococcus pneumoniae R6

66.369

97.11

0.645
  recA Streptococcus pneumoniae TIGR4

66.369

97.11

0.645
  recA Streptococcus pneumoniae Rx1

66.369

97.11

0.645
  recA Streptococcus pneumoniae D39

66.369

97.11

0.645
  recA Streptococcus mitis NCTC 12261

66.071

97.11

0.642
  recA Neisseria gonorrhoeae MS11

65

98.266

0.639
  recA Neisseria gonorrhoeae strain FA1090

65

98.266

0.639
  recA Neisseria gonorrhoeae MS11

65

98.266

0.639
  recA Streptococcus mitis SK321

65.97

96.821

0.639
  recA Streptococcus mutans UA159

67.173

95.087

0.639
  recA Ralstonia pseudosolanacearum GMI1000

67.492

93.353

0.63
  recA Streptococcus pyogenes NZ131

66.361

94.509

0.627
  recA Vibrio cholerae strain A1552

62.5

99.422

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

99.422

0.621
  recA Lactococcus lactis subsp. cremoris KW2

64.848

95.376

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.266

0.607
  recA Pseudomonas stutzeri DSM 10701

65.625

92.486

0.607
  recA Glaesserella parasuis strain SC1401

61.905

97.11

0.601
  recA Helicobacter pylori strain NCTC11637

60.465

99.422

0.601
  recA Helicobacter pylori 26695

60.465

99.422

0.601
  recA Acinetobacter baumannii D1279779

60.767

97.977

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.509

0.584
  recA Acinetobacter baylyi ADP1

62.112

93.064

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

92.486

0.555