Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS76_RS08140 Genome accession   NZ_CP085717
Coordinates   1640818..1642059 (+) Length   413 a.a.
NCBI ID   WP_252294368.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1635818..1647059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS08115 (LIS76_08120) - 1636786..1637511 (+) 726 WP_252294360.1 SDR family oxidoreductase -
  LIS76_RS08120 (LIS76_08125) - 1637593..1637853 (+) 261 WP_252294362.1 DUF3243 domain-containing protein -
  LIS76_RS08125 (LIS76_08130) - 1638444..1639235 (+) 792 WP_252294364.1 DUF3388 domain-containing protein -
  LIS76_RS08130 (LIS76_08135) - 1639253..1640155 (+) 903 WP_252294366.1 helix-turn-helix domain-containing protein -
  LIS76_RS08135 (LIS76_08140) pgsA 1640209..1640793 (+) 585 WP_252290133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS76_RS08140 (LIS76_08145) cinA 1640818..1642059 (+) 1242 WP_252294368.1 competence/damage-inducible protein A Machinery gene
  LIS76_RS08145 (LIS76_08150) recA 1642385..1643425 (+) 1041 WP_252294370.1 recombinase RecA Machinery gene
  LIS76_RS08150 (LIS76_08155) rny 1643720..1645279 (+) 1560 WP_252295422.1 ribonuclease Y -
  LIS76_RS08155 (LIS76_08160) - 1645381..1646178 (+) 798 WP_252294372.1 TIGR00282 family metallophosphoesterase -
  LIS76_RS08160 (LIS76_08165) spoVS 1646340..1646600 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45445.91 Da        Isoelectric Point: 5.1039

>NTDB_id=619575 LIS76_RS08140 WP_252294368.1 1640818..1642059(+) (cinA) [Peribacillus asahii strain CMF4]
MDAEIIAVGSELLLGQIVNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIELAESRADLIVFTGGLGPTKDDLTKET
IARHLGKQLVFDEEALRSIEDYFSKKGRIMTENNKKQALVLDGCHVLRNDHGMAPGMVLTQAGITYMLLPGPPKEMEPMF
LSYGCQQLQNRLQSKERIESKVLRFYGIGEALLETEIEDLLENQTNPTIAPLAADGEVTLRITAKDESKEKCEALISQVE
AEILRRVGQFYYGSDQTSLIQELVKELTKRNMTIAVAESLTGGMFQEQLTTIPGVSAIFKGGVVSYATAVKAKMLHVSEA
TIATYGVVSEQCALEMAANIRTELESDVGISFTGVAGPGEQEGKPAGTVFIGISYRDGRSHVQSLNLSGSRAQNRIRTVK
YGCHYLLRDIQQM

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=619575 LIS76_RS08140 WP_252294368.1 1640818..1642059(+) (cinA) [Peribacillus asahii strain CMF4]
ATGGATGCAGAAATTATTGCTGTTGGTTCCGAGCTATTACTAGGGCAAATTGTGAATACAAATGGTCGTTTTTTATCGCA
GCAGTTTGCTGAAATGGGGATTAATGTTTTTTATCATACGGTCGTTGGCGATAATGATCGTCGCTTGCAGCAAGCTATTG
AATTAGCTGAGTCCCGTGCTGATTTAATTGTATTTACAGGTGGGCTTGGTCCAACGAAAGATGATTTAACGAAAGAAACA
ATCGCCCGTCATTTAGGGAAACAGCTCGTGTTTGATGAGGAGGCTCTTCGTTCTATTGAAGATTATTTCAGTAAAAAGGG
TCGGATAATGACAGAAAATAATAAAAAGCAAGCCCTTGTTTTAGACGGCTGTCATGTCCTAAGAAATGATCATGGAATGG
CGCCGGGAATGGTTTTAACTCAAGCGGGCATTACATACATGTTATTACCTGGTCCTCCAAAAGAGATGGAACCGATGTTT
TTAAGCTACGGCTGTCAACAATTACAAAATAGACTTCAAAGTAAGGAGCGAATTGAATCAAAGGTTCTTCGCTTTTACGG
CATAGGAGAAGCGTTACTAGAAACAGAAATTGAGGACTTGCTAGAGAATCAAACAAATCCAACGATTGCACCGTTAGCAG
CAGACGGTGAAGTAACATTACGGATTACTGCTAAAGATGAATCAAAGGAAAAATGCGAAGCCCTTATTTCACAAGTAGAA
GCTGAAATTCTCCGCCGTGTTGGTCAATTTTATTATGGCAGCGATCAAACGTCTCTTATTCAAGAATTAGTAAAAGAGCT
AACAAAGCGTAATATGACCATTGCTGTTGCTGAAAGCTTAACAGGTGGGATGTTTCAAGAACAATTAACGACCATTCCTG
GTGTTAGCGCAATATTTAAAGGCGGCGTTGTTAGCTATGCAACTGCAGTAAAAGCAAAAATGCTTCATGTAAGTGAAGCG
ACAATTGCAACTTACGGTGTTGTTAGCGAACAATGTGCCCTTGAAATGGCAGCTAATATACGTACGGAGCTGGAGAGCGA
TGTCGGAATTAGCTTCACTGGTGTAGCAGGGCCAGGAGAACAGGAAGGTAAACCAGCCGGTACAGTTTTCATTGGTATCT
CGTATCGAGATGGCCGCTCTCATGTTCAATCTTTAAACCTTTCTGGAAGTAGGGCACAAAATAGGATTCGGACTGTCAAA
TATGGCTGTCATTATTTATTAAGAGATATACAGCAAATGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.366

99.274

0.55
  cinA Streptococcus mitis SK321

46.42

98.063

0.455
  cinA Streptococcus mitis NCTC 12261

46.173

98.063

0.453
  cinA Streptococcus pneumoniae TIGR4

46.173

98.063

0.453
  cinA Streptococcus pneumoniae Rx1

45.679

98.063

0.448
  cinA Streptococcus pneumoniae R6

45.679

98.063

0.448
  cinA Streptococcus pneumoniae D39

45.432

98.063

0.446
  cinA Streptococcus mutans UA159

43.176

97.579

0.421
  cinA Streptococcus suis isolate S10

38.287

96.126

0.368