Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT37_RS08165 Genome accession   NZ_CP085714
Coordinates   1637801..1638841 (+) Length   346 a.a.
NCBI ID   WP_252290137.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632801..1643841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS08140 (LIT37_08150) - 1633009..1633269 (+) 261 WP_119116501.1 DUF3243 domain-containing protein -
  LIT37_RS08145 (LIT37_08155) - 1633858..1634649 (+) 792 WP_119116500.1 DUF3388 domain-containing protein -
  LIT37_RS08150 (LIT37_08160) - 1634667..1635569 (+) 903 WP_252290132.1 helix-turn-helix domain-containing protein -
  LIT37_RS08155 (LIT37_08165) pgsA 1635623..1636207 (+) 585 WP_252290133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT37_RS08160 (LIT37_08170) cinA 1636230..1637471 (+) 1242 WP_252290136.1 competence/damage-inducible protein A Machinery gene
  LIT37_RS08165 (LIT37_08175) recA 1637801..1638841 (+) 1041 WP_252290137.1 recombinase RecA Machinery gene
  LIT37_RS08170 (LIT37_08180) rny 1639136..1640695 (+) 1560 WP_252291409.1 ribonuclease Y -
  LIT37_RS08175 (LIT37_08185) - 1640797..1641594 (+) 798 WP_252290139.1 TIGR00282 family metallophosphoesterase -
  LIT37_RS08180 (LIT37_08190) spoVS 1641759..1642019 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -
  LIT37_RS08185 (LIT37_08195) - 1642141..1643061 (+) 921 WP_286676522.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37585.81 Da        Isoelectric Point: 4.9093

>NTDB_id=619529 LIT37_RS08165 WP_252290137.1 1637801..1638841(+) (recA) [Peribacillus asahii strain CK1]
MSDRQAALEMALKQIEKQFGKGSIMKMGEQTDRKISTISSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQANGGTAAFIDAEHALDPVYSQKLGVNVDELLLSQPDTAEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAINKSNTIAIFINQVREKIGIMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KVKIVKNKVAPPFRQAEVDIMYGEGISREGEIIDMGADLDIVEKSGSWYAYNGERLGQGRENAKLFLKENKDIAKEISQK
IRDHYNLDGEHILPEGADDEELLPLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=619529 LIT37_RS08165 WP_252290137.1 1637801..1638841(+) (recA) [Peribacillus asahii strain CK1]
ATGAGTGATCGTCAAGCCGCATTAGAAATGGCGTTAAAGCAGATTGAAAAGCAATTCGGAAAAGGTTCTATTATGAAGAT
GGGAGAACAAACAGACCGAAAGATTTCTACTATTTCAAGTGGTTCTCTTGCTTTGGATATAGCTCTTGGAGTGGGCGGGT
ATCCACGTGGAAGAATTATTGAAATTTATGGACCAGAAAGTTCAGGTAAAACAACAGTGGCTCTTCATGCCATTGCGGAA
GTACAAGCTAATGGCGGCACAGCTGCGTTTATTGATGCTGAACATGCGCTCGACCCAGTTTATTCACAAAAGCTTGGTGT
AAATGTTGATGAATTACTGTTATCTCAACCAGATACGGCTGAGCAAGGGCTTGAAATCGCTGAAGCCTTAGTACGAAGTG
GTGCAGTCGATATTATCGTTATTGATTCGGTTGCTGCATTAGTACCAAAAGCAGAAATCGAAGGGGAAATGGGTGACTCA
CACATGGGTCTTCAAGCGCGCCTTATGTCCCAAGCTCTTAGAAAGTTATCCGGTGCAATTAATAAATCGAATACAATCGC
GATTTTTATTAACCAAGTTCGTGAAAAAATCGGTATTATGTTCGGAAATCCCGAAACAACTCCAGGTGGGCGTGCGCTTA
AGTTTTACTCAACTGTTCGTCTGGAAGTACGTCGTGCTGAGCAATTAAAACAAGGGAATGAAATAGTAGGAAATAAAACA
AAAGTAAAAATTGTTAAAAACAAAGTGGCACCCCCATTCCGTCAAGCGGAAGTGGATATTATGTATGGAGAAGGAATTTC
ACGTGAAGGTGAAATAATTGACATGGGAGCTGACTTGGATATCGTCGAAAAAAGTGGTTCATGGTATGCCTATAATGGTG
AGCGCCTCGGACAAGGCCGTGAAAACGCGAAGCTTTTCTTAAAAGAAAATAAAGACATTGCAAAAGAGATTTCTCAAAAA
ATTCGCGATCATTATAATTTAGACGGGGAACATATACTGCCAGAAGGAGCAGACGATGAGGAGCTGCTACCTCTTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.483

96.243

0.803
  recA Latilactobacillus sakei subsp. sakei 23K

70.605

100

0.708
  recA Neisseria gonorrhoeae strain FA1090

65.294

98.266

0.642
  recA Neisseria gonorrhoeae MS11

65.294

98.266

0.642
  recA Neisseria gonorrhoeae MS11

65.294

98.266

0.642
  recA Streptococcus mitis NCTC 12261

66.071

97.11

0.642
  recA Streptococcus pneumoniae Rx1

65.774

97.11

0.639
  recA Streptococcus pneumoniae D39

65.774

97.11

0.639
  recA Streptococcus pneumoniae TIGR4

65.774

97.11

0.639
  recA Streptococcus pneumoniae R6

65.774

97.11

0.639
  recA Streptococcus mitis SK321

65.672

96.821

0.636
  recA Streptococcus mutans UA159

66.869

95.087

0.636
  recA Vibrio cholerae strain A1552

62.791

99.422

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.791

99.422

0.624
  recA Streptococcus pyogenes NZ131

66.055

94.509

0.624
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.462

0.619
  recA Lactococcus lactis subsp. cremoris KW2

64.848

95.376

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.266

0.607
  recA Pseudomonas stutzeri DSM 10701

65.625

92.486

0.607
  recA Glaesserella parasuis strain SC1401

61.905

97.11

0.601
  recA Helicobacter pylori 26695

62.162

96.243

0.598
  recA Helicobacter pylori strain NCTC11637

62.162

96.243

0.598
  recA Acinetobacter baumannii D1279779

60.767

97.977

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.509

0.584
  recA Acinetobacter baylyi ADP1

62.112

93.064

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.486

0.558