Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT37_RS08160 Genome accession   NZ_CP085714
Coordinates   1636230..1637471 (+) Length   413 a.a.
NCBI ID   WP_252290136.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1631230..1642471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS08135 (LIT37_08145) - 1631762..1632487 (+) 726 WP_252290130.1 SDR family oxidoreductase -
  LIT37_RS08140 (LIT37_08150) - 1633009..1633269 (+) 261 WP_119116501.1 DUF3243 domain-containing protein -
  LIT37_RS08145 (LIT37_08155) - 1633858..1634649 (+) 792 WP_119116500.1 DUF3388 domain-containing protein -
  LIT37_RS08150 (LIT37_08160) - 1634667..1635569 (+) 903 WP_252290132.1 helix-turn-helix domain-containing protein -
  LIT37_RS08155 (LIT37_08165) pgsA 1635623..1636207 (+) 585 WP_252290133.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT37_RS08160 (LIT37_08170) cinA 1636230..1637471 (+) 1242 WP_252290136.1 competence/damage-inducible protein A Machinery gene
  LIT37_RS08165 (LIT37_08175) recA 1637801..1638841 (+) 1041 WP_252290137.1 recombinase RecA Machinery gene
  LIT37_RS08170 (LIT37_08180) rny 1639136..1640695 (+) 1560 WP_252291409.1 ribonuclease Y -
  LIT37_RS08175 (LIT37_08185) - 1640797..1641594 (+) 798 WP_252290139.1 TIGR00282 family metallophosphoesterase -
  LIT37_RS08180 (LIT37_08190) spoVS 1641759..1642019 (+) 261 WP_119116493.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45561.09 Da        Isoelectric Point: 5.2207

>NTDB_id=619528 LIT37_RS08160 WP_252290136.1 1636230..1637471(+) (cinA) [Peribacillus asahii strain CK1]
MDAEIIAVGSELLLGQIVNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIELAESRADLIVFTGGLGPTKDDLTKET
IARHLGKQLVFDEEALRSIEDYFSKKGRIMTENNKKQALVLEGCHVLRNDHGMAPGMVLTQAGITYMLLPGPPKEMEPMF
LSYGCQQLQNRLQSKERIESKVLRFYGIGEALLETEIEDLLENQTNPTIAPLAADGEVTLRITAKDKSKEKCEALISQVE
AEILRRVGQFYYGSDQTSLIQELVKELTKRNMTIAVAESLTGGMFQEQLTTIPGVSAIFKGGVVSYATAVKAKMLHVSEA
TIATYGVVSEQCALEMATNIRTELESDVGISFTGVAGPEEQEGKPAGTVFIGISYRDGRSHVQSLNLSGSRAQNRIRTVK
YGCHYLLRDIQQM

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=619528 LIT37_RS08160 WP_252290136.1 1636230..1637471(+) (cinA) [Peribacillus asahii strain CK1]
ATGGATGCAGAAATTATTGCTGTTGGTTCCGAGCTATTACTAGGGCAAATTGTGAATACAAATGGTCGTTTTTTATCGCA
GCAGTTTGCTGAAATGGGGATTAATGTTTTTTATCATACAGTCGTTGGCGATAATGATCGTCGCTTGCAGCAAGCTATTG
AATTAGCTGAGTCCCGTGCTGATTTGATTGTATTTACAGGTGGGCTTGGTCCAACGAAAGATGATTTAACGAAAGAAACA
ATCGCCCGTCATTTAGGGAAACAGCTCGTGTTTGATGAGGAAGCTCTTCGTTCTATTGAAGATTATTTCAGTAAAAAGGG
TCGGATAATGACAGAAAATAATAAAAAGCAAGCTCTTGTTTTAGAAGGCTGTCATGTTCTAAGAAATGATCATGGAATGG
CGCCGGGAATGGTGTTAACTCAAGCGGGCATTACATACATGTTATTACCTGGTCCTCCAAAAGAGATGGAACCGATGTTT
TTAAGCTACGGCTGTCAACAATTACAAAATAGACTTCAAAGTAAGGAGCGAATTGAATCAAAGGTTCTTCGCTTTTACGG
CATAGGAGAAGCGCTATTAGAAACAGAAATTGAGGACTTGCTAGAGAATCAAACAAATCCAACGATTGCACCTTTAGCAG
CAGACGGTGAAGTAACATTACGGATTACTGCTAAAGATAAATCAAAGGAAAAATGCGAAGCCCTTATTTCACAAGTAGAA
GCTGAAATTCTCCGCCGTGTTGGTCAATTTTATTATGGCAGCGATCAAACGTCTCTTATTCAAGAATTAGTAAAAGAGCT
AACAAAGCGTAATATGACCATTGCTGTTGCCGAAAGCTTAACAGGTGGGATGTTTCAAGAACAATTAACGACCATTCCTG
GTGTTAGCGCAATATTTAAAGGCGGCGTTGTTAGCTATGCAACTGCAGTAAAAGCAAAAATGCTTCATGTAAGTGAAGCG
ACGATTGCAACTTACGGTGTTGTTAGCGAACAATGTGCTCTTGAAATGGCAACTAATATACGTACGGAGCTGGAGAGCGA
TGTCGGAATTAGCTTTACTGGTGTAGCAGGGCCAGAGGAACAGGAGGGGAAACCAGCCGGTACAGTCTTTATTGGTATCT
CGTATCGTGATGGTCGTTCTCATGTTCAATCTTTAAACCTTTCTGGAAGTAGGGCACAAAATAGGATTCGGACTGTCAAA
TATGGCTGTCATTATTTATTAAGAGATATACAGCAAATGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.61

99.274

0.552
  cinA Streptococcus mitis SK321

46.667

98.063

0.458
  cinA Streptococcus mitis NCTC 12261

46.42

98.063

0.455
  cinA Streptococcus pneumoniae TIGR4

46.42

98.063

0.455
  cinA Streptococcus pneumoniae Rx1

45.926

98.063

0.45
  cinA Streptococcus pneumoniae R6

45.926

98.063

0.45
  cinA Streptococcus pneumoniae D39

45.679

98.063

0.448
  cinA Streptococcus mutans UA159

43.176

97.579

0.421
  cinA Streptococcus suis isolate S10

38.791

96.126

0.373