Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIS82_RS11610 Genome accession   NZ_CP085712
Coordinates   2213750..2214790 (+) Length   346 a.a.
NCBI ID   WP_053475735.1    Uniprot ID   A0A0Q3QM79
Organism   Cytobacillus solani strain F27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2208750..2219790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS11585 (LIS82_11595) - 2209440..2209700 (+) 261 WP_053475730.1 DUF3243 domain-containing protein -
  LIS82_RS11590 (LIS82_11600) - 2209860..2210651 (+) 792 WP_053475731.1 DUF3388 domain-containing protein -
  LIS82_RS11595 (LIS82_11605) - 2210674..2211588 (+) 915 WP_056684204.1 RodZ domain-containing protein -
  LIS82_RS11600 (LIS82_11610) pgsA 2211640..2212218 (+) 579 WP_053475733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS82_RS11605 (LIS82_11615) cinA 2212261..2213514 (+) 1254 WP_252240048.1 competence/damage-inducible protein A Machinery gene
  LIS82_RS11610 (LIS82_11620) recA 2213750..2214790 (+) 1041 WP_053475735.1 recombinase RecA Machinery gene
  LIS82_RS11615 (LIS82_11625) rny 2215042..2216607 (+) 1566 WP_053475736.1 ribonuclease Y -
  LIS82_RS11620 (LIS82_11630) - 2216713..2217510 (+) 798 WP_252240049.1 TIGR00282 family metallophosphoesterase -
  LIS82_RS11625 (LIS82_11635) spoVS 2217998..2218258 (+) 261 WP_009791522.1 stage V sporulation protein SpoVS -
  LIS82_RS11630 (LIS82_11640) - 2218420..2219349 (+) 930 WP_252240050.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37558.74 Da        Isoelectric Point: 4.9833

>NTDB_id=619487 LIS82_RS11610 WP_053475735.1 2213750..2214790(+) (recA) [Cytobacillus solani strain F27]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRKISTIPSGSLALDIALGVGGYPRGRIIETYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEAIKQGQDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEIIDIGSELDIVQKSGSWYSFNDERVGQGRENAKLFLKENPEIRKQIQTQ
IRDHYGLDGEHVVSGDDEQEELQLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=619487 LIS82_RS11610 WP_053475735.1 2213750..2214790(+) (recA) [Cytobacillus solani strain F27]
ATGAGTGATCGTCAAGCAGCACTGGAGATGGCGTTAAAACAAATAGAAAAACAATTTGGTAAAGGTTCAATTATGAAGCT
TGGAGAGCAAACAGACCGGAAAATTTCAACAATTCCAAGCGGATCACTTGCCCTCGATATAGCACTTGGGGTAGGCGGAT
ATCCAAGAGGACGTATTATTGAAACATATGGACCAGAAAGCTCAGGTAAAACAACGGTTGCCCTTCATGCAATCGCAGAG
GTACAAGCCGCTGGCGGACAGGCAGCATTTATCGATGCAGAACACGCACTCGATCCAGTTTATGCGCAAAAACTGGGAGT
TAATATTGATGAATTATTGCTTTCACAGCCAGATACGGGAGAGCAAGCATTGGAGATTGCTGAAGCGCTTGTAAGAAGTG
GTGCAGTTGATATCCTTGTCATTGACTCTGTTGCAGCACTCGTACCTAAGGCGGAAATTGAAGGAGAAATGGGAGACTCG
CATGTCGGATTACAAGCACGTCTAATGTCTCAAGCCCTTCGTAAACTATCAGGCGCAATCAATAAATCAAAAACAATTGC
TATTTTCATAAACCAAATCCGTGAAAAAGTTGGAGTTATGTTTGGAAATCCAGAGACAACTCCAGGAGGACGCGCGTTGA
AGTTTTACTCAACAGTCCGTCTTGAAGTGCGCCGTGCTGAAGCAATAAAGCAAGGTCAAGATATTGTAGGTAACAAAACA
AAAATTAAAGTTGTTAAAAATAAAGTTGCACCTCCATTCCGTGTAGCGGAGGTTGATATTATGTATGGAGAAGGTATTTC
AAGAGAAGGCGAAATTATTGATATAGGCTCTGAACTGGACATTGTTCAAAAAAGTGGTTCATGGTATTCCTTCAATGATG
AGCGTGTCGGTCAAGGTCGAGAAAATGCTAAGCTATTCTTGAAAGAAAACCCTGAAATCCGTAAGCAAATTCAAACACAA
ATCCGTGATCATTATGGACTCGATGGGGAACATGTTGTAAGCGGTGATGATGAACAAGAGGAATTACAGCTAATTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3QM79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.288

96.243

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

73.235

98.266

0.72
  recA Streptococcus pneumoniae D39

68.406

99.711

0.682
  recA Streptococcus pneumoniae R6

68.406

99.711

0.682
  recA Streptococcus pneumoniae TIGR4

68.406

99.711

0.682
  recA Streptococcus pneumoniae Rx1

68.406

99.711

0.682
  recA Streptococcus mitis SK321

66.857

100

0.676
  recA Streptococcus mitis NCTC 12261

69.345

97.11

0.673
  recA Streptococcus mutans UA159

69.301

95.087

0.659
  recA Streptococcus pyogenes NZ131

68.598

94.798

0.65
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.376

0.642
  recA Neisseria gonorrhoeae MS11

63.529

98.266

0.624
  recA Neisseria gonorrhoeae MS11

63.529

98.266

0.624
  recA Neisseria gonorrhoeae strain FA1090

63.529

98.266

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

98.266

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.138

94.509

0.616
  recA Vibrio cholerae strain A1552

65.732

92.775

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.732

92.775

0.61
  recA Helicobacter pylori strain NCTC11637

60.526

98.844

0.598
  recA Helicobacter pylori 26695

60.234

98.844

0.595
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Acinetobacter baylyi ADP1

59.882

97.977

0.587
  recA Acinetobacter baumannii D1279779

59.882

97.977

0.587
  recA Glaesserella parasuis strain SC1401

61.515

95.376

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.486

0.561