Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS82_RS11605 Genome accession   NZ_CP085712
Coordinates   2212261..2213514 (+) Length   417 a.a.
NCBI ID   WP_252240048.1    Uniprot ID   -
Organism   Cytobacillus solani strain F27     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2207261..2218514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS11580 (LIS82_11590) - 2208610..2209332 (+) 723 WP_252240047.1 SDR family oxidoreductase -
  LIS82_RS11585 (LIS82_11595) - 2209440..2209700 (+) 261 WP_053475730.1 DUF3243 domain-containing protein -
  LIS82_RS11590 (LIS82_11600) - 2209860..2210651 (+) 792 WP_053475731.1 DUF3388 domain-containing protein -
  LIS82_RS11595 (LIS82_11605) - 2210674..2211588 (+) 915 WP_056684204.1 RodZ domain-containing protein -
  LIS82_RS11600 (LIS82_11610) pgsA 2211640..2212218 (+) 579 WP_053475733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS82_RS11605 (LIS82_11615) cinA 2212261..2213514 (+) 1254 WP_252240048.1 competence/damage-inducible protein A Machinery gene
  LIS82_RS11610 (LIS82_11620) recA 2213750..2214790 (+) 1041 WP_053475735.1 recombinase RecA Machinery gene
  LIS82_RS11615 (LIS82_11625) rny 2215042..2216607 (+) 1566 WP_053475736.1 ribonuclease Y -
  LIS82_RS11620 (LIS82_11630) - 2216713..2217510 (+) 798 WP_252240049.1 TIGR00282 family metallophosphoesterase -
  LIS82_RS11625 (LIS82_11635) spoVS 2217998..2218258 (+) 261 WP_009791522.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46033.86 Da        Isoelectric Point: 5.1150

>NTDB_id=619486 LIS82_RS11605 WP_252240048.1 2212261..2213514(+) (cinA) [Cytobacillus solani strain F27]
MNAEIIAVGSELLLGQIVNTNARFLSRQLADLGINVFYHTCVGDNPDRLKAVIKMAEERSNLLIFTGGLGPTKDDLTKET
IAKHVNKKLIMNNEALQSIELYFERTNRQMTENNKKQAIVLEDSHILPNDHGMAPGMLLDGGNHTYMLLPGPPKEMEPMF
LKYGYPALRSLLLEEDVILSRVLRFFGIGEAMLETEIEDLIDAQTNPTIAPLASDGEVTLRLTAKHEQMDTALRLLDETE
NNILSRIGEYFYGYDETSLMRELIKHIKEKKLTIACAESLTGGMFQQEFTAIPGAGDLLKGGVVCYTNEVKTNVLNVQKS
TIAENGVVSEQCARELAKNVASLMNADIGISFTGVAGPDELEGKPVGTVYIGISINNETVQVEKLNFGGTREAIRVRSVK
YGCHFLIKRLNGSQNAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=619486 LIS82_RS11605 WP_252240048.1 2212261..2213514(+) (cinA) [Cytobacillus solani strain F27]
ATGAATGCAGAAATAATTGCAGTTGGTTCTGAATTATTGCTTGGTCAAATTGTTAATACAAATGCGCGCTTTTTGTCCAG
GCAGCTTGCCGATTTAGGGATTAATGTTTTTTATCATACATGTGTTGGTGATAACCCTGATCGCCTTAAAGCAGTGATTA
AAATGGCAGAGGAGCGTTCGAATCTTCTTATATTCACTGGAGGATTAGGACCAACAAAAGATGACTTAACAAAGGAAACG
ATCGCAAAGCATGTAAATAAAAAACTGATTATGAATAATGAGGCTCTTCAGTCGATTGAACTTTATTTCGAGCGCACGAA
TCGACAGATGACGGAAAATAATAAGAAGCAGGCAATTGTTTTAGAGGATTCACATATTTTGCCGAATGATCATGGGATGG
CTCCTGGAATGTTGCTTGATGGTGGAAACCATACCTATATGCTTCTACCCGGACCACCGAAAGAAATGGAACCAATGTTT
TTGAAATATGGCTACCCAGCTCTTCGTTCCTTGCTACTAGAGGAAGATGTGATCCTTTCCCGTGTATTAAGATTTTTTGG
GATTGGAGAAGCGATGCTCGAAACAGAAATTGAAGATTTAATTGATGCACAGACGAATCCGACGATAGCGCCACTTGCAT
CGGATGGGGAAGTAACTCTTCGTTTAACAGCCAAGCATGAGCAAATGGATACAGCTTTAAGACTTCTAGATGAGACTGAA
AATAACATTCTCTCTCGAATCGGAGAATATTTCTATGGATATGATGAGACTTCCTTAATGCGTGAGTTAATTAAACATAT
TAAGGAAAAAAAGCTGACGATTGCTTGCGCTGAGAGTCTGACAGGAGGTATGTTCCAGCAGGAGTTTACAGCAATTCCTG
GGGCAGGAGACCTTCTTAAAGGCGGTGTTGTTTGTTATACAAATGAAGTTAAAACAAATGTGCTAAACGTCCAGAAATCA
ACAATTGCTGAAAATGGTGTCGTAAGCGAGCAATGTGCACGTGAGTTAGCAAAAAACGTTGCCTCCCTTATGAACGCGGA
TATTGGCATTAGCTTTACAGGCGTTGCGGGTCCTGATGAATTAGAAGGCAAACCAGTTGGAACTGTATACATTGGTATTT
CAATAAATAATGAGACTGTTCAAGTTGAAAAGCTAAATTTTGGCGGAACAAGAGAAGCCATCCGGGTAAGAAGTGTAAAG
TATGGATGTCATTTTTTAATAAAGAGATTAAATGGAAGTCAGAATGCCAAATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.029

97.842

0.597
  cinA Streptococcus mitis SK321

45.238

100

0.456
  cinA Streptococcus pneumoniae TIGR4

45

100

0.453
  cinA Streptococcus mitis NCTC 12261

44.762

100

0.451
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.448
  cinA Streptococcus pneumoniae R6

44.524

100

0.448
  cinA Streptococcus pneumoniae D39

44.286

100

0.446
  cinA Streptococcus mutans UA159

44.153

100

0.444
  cinA Streptococcus suis isolate S10

38.677

94.245

0.365