Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LJR53_RS10055 Genome accession   NZ_CP085682
Coordinates   2247255..2248316 (+) Length   353 a.a.
NCBI ID   WP_025364668.1    Uniprot ID   A0A0F0GA26
Organism   Paenibacillus polymyxa strain YS18-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242255..2253316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJR53_RS10030 - 2242885..2243982 (+) 1098 WP_039277139.1 RodZ domain-containing protein -
  LJR53_RS10035 - 2244067..2244231 (+) 165 WP_257126950.1 hypothetical protein -
  LJR53_RS10040 - 2244377..2244868 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  LJR53_RS10045 pgsA 2245078..2245665 (+) 588 WP_016821003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJR53_RS10050 cinA 2245761..2247029 (+) 1269 WP_016821004.1 competence/damage-inducible protein A Machinery gene
  LJR53_RS10055 recA 2247255..2248316 (+) 1062 WP_025364668.1 recombinase RecA Machinery gene
  LJR53_RS10060 - 2248527..2249276 (+) 750 WP_039277142.1 regulatory protein RecX -
  LJR53_RS10065 rny 2249638..2251182 (+) 1545 WP_013309958.1 ribonuclease Y -
  LJR53_RS10070 - 2251259..2252053 (+) 795 WP_025364670.1 TIGR00282 family metallophosphoesterase -
  LJR53_RS10075 - 2252183..2252443 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38247.59 Da        Isoelectric Point: 4.9974

>NTDB_id=619245 LJR53_RS10055 WP_025364668.1 2247255..2248316(+) (recA) [Paenibacillus polymyxa strain YS18-2]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTIAPPTEEELAQEAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=619245 LJR53_RS10055 WP_025364668.1 2247255..2248316(+) (recA) [Paenibacillus polymyxa strain YS18-2]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCTACCCACATGCAAGTGGAAACAATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCACTTGATCCGTCGTATGCGAGCAAGCTGGGTGT
CAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGTGAGCAGGCATTGGAGATTGCCGAAGCTCTTGTGCGTAGTG
GGGCAGTGGATATTATCGTCATAGACTCTGTAGCGGCACTTGTACCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CATGTCGGTCTTCAAGCGCGTTTGATGTCACAGGCATTACGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATCAACCAGCTCCGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAAACTACACCAGGTGGACGTGCTTTGA
AGTTTTACTCTACGGTACGTTTGGATGTTCGTCGTATCGAAAGCTTGAAAATGGGTAACGACATCGTGGGTAACCGCACA
CGTATTAAAGTCGTGAAGAACAAAGTTGCGCCTCCTTTCCGTCAGGCCGAAGTGGATATTATGTACGGTGAGGGTATTTC
CAAAGAAGGAAGCTTGATTGACATCGGTACGGAGCATGACATTGTGGACAAGAGCGGAGCTTGGTATTCCTACGAAGGCG
AGCGCCTTGGTCAGGGACGTGAGAATGCAAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATCGAGCAAAAA
ATCCGGGTGGCCAGTAATTTGATTACAACAATTGCTCCACCGACAGAAGAAGAGTTAGCGCAGGAGGCCAAGGAAGAACA
GGAATTGCTGGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F0GA26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.404

91.218

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

71.386

96.034

0.686
  recA Streptococcus mitis NCTC 12261

66.476

98.867

0.657
  recA Streptococcus mitis SK321

66.189

98.867

0.654
  recA Streptococcus mutans UA159

65.714

99.15

0.652
  recA Streptococcus pneumoniae R6

68.278

93.768

0.64
  recA Streptococcus pneumoniae D39

68.278

93.768

0.64
  recA Streptococcus pneumoniae TIGR4

68.278

93.768

0.64
  recA Streptococcus pneumoniae Rx1

68.278

93.768

0.64
  recA Streptococcus pyogenes NZ131

68.615

92.068

0.632
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.768

0.629
  recA Neisseria gonorrhoeae MS11

64.671

94.618

0.612
  recA Neisseria gonorrhoeae MS11

64.671

94.618

0.612
  recA Neisseria gonorrhoeae strain FA1090

64.671

94.618

0.612
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.652

0.606
  recA Vibrio cholerae strain A1552

66.875

90.652

0.606
  recA Acinetobacter baumannii D1279779

61.494

98.584

0.606
  recA Glaesserella parasuis strain SC1401

60.857

99.15

0.603
  recA Pseudomonas stutzeri DSM 10701

62.463

96.601

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.908

95.467

0.601
  recA Ralstonia pseudosolanacearum GMI1000

67.857

87.252

0.592
  recA Helicobacter pylori 26695

60.947

95.751

0.584
  recA Helicobacter pylori strain NCTC11637

60.651

95.751

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

92.351

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

91.501

0.547