Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LJR53_RS10050 Genome accession   NZ_CP085682
Coordinates   2245761..2247029 (+) Length   422 a.a.
NCBI ID   WP_016821004.1    Uniprot ID   A0A0F0GE54
Organism   Paenibacillus polymyxa strain YS18-2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2240761..2252029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJR53_RS10020 - 2241597..2241851 (+) 255 WP_016821001.1 DUF3243 domain-containing protein -
  LJR53_RS10025 - 2242081..2242854 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  LJR53_RS10030 - 2242885..2243982 (+) 1098 WP_039277139.1 RodZ domain-containing protein -
  LJR53_RS10035 - 2244067..2244231 (+) 165 WP_257126950.1 hypothetical protein -
  LJR53_RS10040 - 2244377..2244868 (+) 492 WP_013370750.1 YajQ family cyclic di-GMP-binding protein -
  LJR53_RS10045 pgsA 2245078..2245665 (+) 588 WP_016821003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJR53_RS10050 cinA 2245761..2247029 (+) 1269 WP_016821004.1 competence/damage-inducible protein A Machinery gene
  LJR53_RS10055 recA 2247255..2248316 (+) 1062 WP_025364668.1 recombinase RecA Machinery gene
  LJR53_RS10060 - 2248527..2249276 (+) 750 WP_039277142.1 regulatory protein RecX -
  LJR53_RS10065 rny 2249638..2251182 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46396.43 Da        Isoelectric Point: 4.8104

>NTDB_id=619244 LJR53_RS10050 WP_016821004.1 2245761..2247029(+) (cinA) [Paenibacillus polymyxa strain YS18-2]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAQRDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=619244 LJR53_RS10050 WP_016821004.1 2245761..2247029(+) (cinA) [Paenibacillus polymyxa strain YS18-2]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTATCACA
AGAGCTAGCTACAATCGGCATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGACTTCAGGAAGCGGTAC
GACTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGACCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTTGATCAGTTTTTCCGGAACCGCGG
GGTCGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACAGGTTTAG
CTATAGGGGATGCGATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCGCCTAAGGAGCTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAGATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACTCGCTTGCTAGATCTGATCCAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTTACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTAACGGCT
ACGGAAGTACAAATTCAGCAACGTCTTTCCGAATATATGTATGCAAGTGAAGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAACGCGGACTCACTGTGAGTGCGGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCC
TATGATTATTTGGAAGGCGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGTGATTTCGGACTTTCCGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGTCTGG
TGTATATTGGTATTGCTCAGCGTGACAAGGAAACGGAGGTATATGAGCTAAATTTAAGCGGTAACCGTGAGACCATTCGC
TTGCGATCCGTCAAAGCTATCTTGTACAGATTGTGGCGTCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F0GE54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.244

97.156

0.488
  cinA Streptococcus pneumoniae TIGR4

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.756

97.156

0.483
  cinA Streptococcus pneumoniae R6

49.756

97.156

0.483
  cinA Streptococcus pneumoniae D39

49.512

97.156

0.481
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41