Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IUJ58_RS17795 Genome accession   NZ_CP085485
Coordinates   3507718..3508755 (+) Length   345 a.a.
NCBI ID   WP_116075886.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNUC0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3502718..3513755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS17770 (IUJ58_17740) - 3503291..3503551 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  IUJ58_RS17775 (IUJ58_17745) - 3503765..3504556 (+) 792 WP_216143839.1 DUF3388 domain-containing protein -
  IUJ58_RS17780 (IUJ58_17750) - 3504569..3505531 (+) 963 WP_274447550.1 helix-turn-helix domain-containing protein -
  IUJ58_RS17785 (IUJ58_17755) pgsA 3505676..3506260 (+) 585 WP_116075889.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IUJ58_RS17790 (IUJ58_17760) cinA 3506277..3507518 (+) 1242 WP_274447551.1 competence/damage-inducible protein A Machinery gene
  IUJ58_RS17795 (IUJ58_17765) recA 3507718..3508755 (+) 1038 WP_116075886.1 recombinase RecA Machinery gene
  IUJ58_RS17800 (IUJ58_17770) rny 3509036..3510595 (+) 1560 WP_013058803.1 ribonuclease Y -
  IUJ58_RS17805 (IUJ58_17775) - 3510677..3511474 (+) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  IUJ58_RS17810 (IUJ58_17780) spoVS 3511698..3511958 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  IUJ58_RS17815 (IUJ58_17785) - 3512034..3512951 (+) 918 WP_216143843.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37381.24 Da        Isoelectric Point: 4.8279

>NTDB_id=618372 IUJ58_RS17795 WP_116075886.1 3507718..3508755(+) (recA) [Priestia aryabhattai strain KNUC0118]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDVALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQ
VREHHGLDQDGEPAPEDDDQGDLNI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=618372 IUJ58_RS17795 WP_116075886.1 3507718..3508755(+) (recA) [Priestia aryabhattai strain KNUC0118]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCAATTATGAAATT
AGGTGAACAAACGGAAAAAAGAATTTCTACAATTCCAAGTGGTTCATTAGCATTAGATGTAGCTTTAGGCGTAGGGGGAT
ATCCACGAGGACGTGTAGTGGAAGTATATGGCCCAGAAAGCTCAGGTAAAACAACAGTTGCTCTTCATGCGATTGCAGAA
GTTCAACAGCAGGGCGGACAGGCTGCATTTATCGATGCGGAGCACGCGTTAGATCCTGTATATGCCCAAAAATTAGGCGT
TAATATTGATGAGCTGTTATTATCTCAGCCTGATACGGGAGAACAAGCTTTAGAAATCGCTGAAGCTTTAGTTCGAAGCG
GCGCAGTAGATATTATTGTTGTTGACTCAGTAGCAGCGTTAGTGCCAAAAGCGGAAATTGAAGGAGAAATGGGAGACTCT
CACGTGGGTCTACAAGCTCGTTTAATGTCTCAAGCATTGCGTAAACTATCTGGAGCTATCAACAAGTCTAAAACAATCGC
TATCTTTATTAACCAAATTCGTGAAAAAGTCGGCGTAATGTTTGGTAACCCTGAAACAACTCCTGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTAGAAGTGCGTCGTGCAGAGCAGTTAAAGCAAGGAAACGATATCGTAGGTAATAAAACA
AGAATTAAAGTTGTGAAAAACAAAGTAGCTCCGCCTTTCCGTGCTGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
AAAAGAGGGTGAAATTTTGGATATCGCTTCTGAACTAGATATCGTCCAAAAAAGTGGATCTTGGTATTCATATAATGACG
AGCGTCTAGGTCAAGGCCGTGAAAATGCAAAGCAATTCTTAAAAGAAAATACTGATATTCGTCAGGAAATTGCGGGACAA
GTGCGTGAACATCATGGTTTAGACCAAGATGGAGAGCCAGCTCCTGAGGATGACGATCAAGGCGATTTAAATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.332

95.942

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

74.184

97.681

0.725
  recA Streptococcus pneumoniae D39

69.298

99.13

0.687
  recA Streptococcus pneumoniae Rx1

69.298

99.13

0.687
  recA Streptococcus pneumoniae R6

69.298

99.13

0.687
  recA Streptococcus pneumoniae TIGR4

69.298

99.13

0.687
  recA Streptococcus mitis NCTC 12261

69.822

97.971

0.684
  recA Streptococcus mitis SK321

69.822

97.971

0.684
  recA Streptococcus mutans UA159

65.352

100

0.672
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.391

0.658
  recA Streptococcus pyogenes NZ131

68.389

95.362

0.652
  recA Neisseria gonorrhoeae strain FA1090

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.877

91.884

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

99.13

0.606
  recA Vibrio cholerae strain A1552

64.798

93.043

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

93.043

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

95.072

0.6
  recA Acinetobacter baumannii D1279779

60.234

99.13

0.597
  recA Helicobacter pylori strain NCTC11637

61.012

97.391

0.594
  recA Helicobacter pylori 26695

61.012

97.391

0.594
  recA Pseudomonas stutzeri DSM 10701

63.438

92.754

0.588
  recA Acinetobacter baylyi ADP1

62.539

93.623

0.586
  recA Glaesserella parasuis strain SC1401

63.323

92.464

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

93.043

0.571