Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IUJ58_RS17790 Genome accession   NZ_CP085485
Coordinates   3506277..3507518 (+) Length   413 a.a.
NCBI ID   WP_274447551.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNUC0118     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3501277..3512518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS17765 (IUJ58_17735) ymfI 3502500..3503225 (+) 726 WP_216143837.1 elongation factor P 5-aminopentanone reductase -
  IUJ58_RS17770 (IUJ58_17740) - 3503291..3503551 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  IUJ58_RS17775 (IUJ58_17745) - 3503765..3504556 (+) 792 WP_216143839.1 DUF3388 domain-containing protein -
  IUJ58_RS17780 (IUJ58_17750) - 3504569..3505531 (+) 963 WP_274447550.1 helix-turn-helix domain-containing protein -
  IUJ58_RS17785 (IUJ58_17755) pgsA 3505676..3506260 (+) 585 WP_116075889.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IUJ58_RS17790 (IUJ58_17760) cinA 3506277..3507518 (+) 1242 WP_274447551.1 competence/damage-inducible protein A Machinery gene
  IUJ58_RS17795 (IUJ58_17765) recA 3507718..3508755 (+) 1038 WP_116075886.1 recombinase RecA Machinery gene
  IUJ58_RS17800 (IUJ58_17770) rny 3509036..3510595 (+) 1560 WP_013058803.1 ribonuclease Y -
  IUJ58_RS17805 (IUJ58_17775) - 3510677..3511474 (+) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  IUJ58_RS17810 (IUJ58_17780) spoVS 3511698..3511958 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44881.04 Da        Isoelectric Point: 4.9863

>NTDB_id=618371 IUJ58_RS17790 WP_274447551.1 3506277..3507518(+) (cinA) [Priestia aryabhattai strain KNUC0118]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRILRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERIGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGQAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=618371 IUJ58_RS17790 WP_274447551.1 3506277..3507518(+) (cinA) [Priestia aryabhattai strain KNUC0118]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAGCTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAACGCACAGCGCTTGAAAGAAGTGA
TTGCTACAGCTCAAACACGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCGGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGGAAACACTATATGCTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCATTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTCCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAGACCATTTCAGAGCGCATAGGCGAGTATTTATATGGATACGAAGCCACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCTGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CGGGTGCTGGACAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGTTTTACGGGTGTAGCTGGACCCTCCAAACAAGAAGGCCATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTACGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.467
  cinA Streptococcus mitis SK321

45.952

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.462
  cinA Streptococcus pneumoniae R6

45.476

100

0.462
  cinA Streptococcus pneumoniae D39

45.238

100

0.46
  cinA Streptococcus mutans UA159

44.39

99.274

0.441