Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIS78_RS21000 Genome accession   NZ_CP085442
Coordinates   4041689..4042726 (-) Length   345 a.a.
NCBI ID   WP_195782030.1    Uniprot ID   -
Organism   Priestia megaterium strain KF18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4036689..4047726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS78_RS20975 (LIS78_20995) - 4037132..4037308 (-) 177 WP_195782032.1 hypothetical protein -
  LIS78_RS20980 (LIS78_21000) - 4037493..4038410 (-) 918 WP_252284305.1 dipeptidase -
  LIS78_RS20985 (LIS78_21005) spoVS 4038486..4038746 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LIS78_RS20990 (LIS78_21010) - 4038970..4039767 (-) 798 WP_252284306.1 TIGR00282 family metallophosphoesterase -
  LIS78_RS20995 (LIS78_21015) rny 4039849..4041408 (-) 1560 WP_013058803.1 ribonuclease Y -
  LIS78_RS21000 (LIS78_21020) recA 4041689..4042726 (-) 1038 WP_195782030.1 recombinase RecA Machinery gene
  LIS78_RS21005 (LIS78_21025) cinA 4042926..4044164 (-) 1239 WP_209150618.1 competence/damage-inducible protein A Machinery gene
  LIS78_RS21010 (LIS78_21030) pgsA 4044184..4044768 (-) 585 WP_195782028.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS78_RS21015 (LIS78_21035) - 4044913..4045881 (-) 969 WP_252284307.1 RodZ domain-containing protein -
  LIS78_RS21020 (LIS78_21040) - 4045894..4046685 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  LIS78_RS21025 (LIS78_21045) - 4046899..4047159 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37380.26 Da        Isoelectric Point: 4.8949

>NTDB_id=618146 LIS78_RS21000 WP_195782030.1 4041689..4042726(-) (recA) [Priestia megaterium strain KF18]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDVALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQ
VREHHGLDQDGEPAPEDNDQGDLNI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=618146 LIS78_RS21000 WP_195782030.1 4041689..4042726(-) (recA) [Priestia megaterium strain KF18]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCAATTATGAAATT
AGGTGAACAAACGGAAAAAAGAATTTCTACAATTCCAAGTGGTTCATTAGCATTAGATGTAGCTTTAGGTGTAGGCGGAT
ATCCACGTGGACGTGTAGTGGAAGTATATGGCCCAGAAAGCTCAGGTAAAACAACAGTTGCTCTTCATGCGATTGCAGAA
GTTCAACAGCAGGGCGGACAAGCTGCATTTATCGATGCGGAGCACGCGTTAGATCCTGTATATGCTCAAAAATTAGGTGT
GAATATTGATGAGCTATTATTATCTCAGCCTGATACGGGAGAACAAGCTTTAGAAATTGCTGAAGCCTTAGTTCGAAGCG
GCGCAGTAGATATTATCGTTGTCGACTCAGTAGCAGCGTTAGTGCCAAAAGCGGAAATTGAAGGAGAAATGGGAGACTCT
CACGTGGGTCTACAAGCTCGTTTAATGTCTCAAGCATTGCGTAAACTATCTGGAGCTATCAACAAGTCTAAAACAATCGC
TATCTTTATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTTGGTAACCCTGAAACAACTCCTGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTAGAAGTGCGTCGTGCAGAGCAGTTAAAGCAAGGAAACGATATTGTAGGTAACAAAACA
AGAATTAAAGTTGTGAAAAACAAAGTAGCTCCGCCTTTCCGTGCTGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
CAAAGAGGGTGAAATTTTGGATATCGCTTCTGAACTAGATATTGTTCAAAAAAGTGGATCTTGGTATTCATATAATGATG
AGCGTCTAGGTCAAGGTCGTGAAAATGCAAAACAATTCTTAAAAGAAAATACTGATATTCGTCAGGAAATTGCGGGACAA
GTGCGTGAACATCATGGTTTAGACCAAGATGGAGAGCCAGCTCCTGAGGATAACGATCAAGGCGATTTAAATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.332

95.942

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

74.041

98.261

0.728
  recA Streptococcus pneumoniae D39

69.006

99.13

0.684
  recA Streptococcus pneumoniae Rx1

69.006

99.13

0.684
  recA Streptococcus pneumoniae R6

69.006

99.13

0.684
  recA Streptococcus pneumoniae TIGR4

69.006

99.13

0.684
  recA Streptococcus mitis NCTC 12261

69.822

97.971

0.684
  recA Streptococcus mitis SK321

69.822

97.971

0.684
  recA Streptococcus mutans UA159

69.091

95.652

0.661
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.391

0.658
  recA Streptococcus pyogenes NZ131

68.389

95.362

0.652
  recA Neisseria gonorrhoeae strain FA1090

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.877

91.884

0.614
  recA Vibrio cholerae strain A1552

64.798

93.043

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

93.043

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.819

99.13

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

95.072

0.6
  recA Acinetobacter baumannii D1279779

60.234

99.13

0.597
  recA Glaesserella parasuis strain SC1401

60.058

99.42

0.597
  recA Helicobacter pylori strain NCTC11637

61.012

97.391

0.594
  recA Helicobacter pylori 26695

61.012

97.391

0.594
  recA Pseudomonas stutzeri DSM 10701

63.438

92.754

0.588
  recA Acinetobacter baylyi ADP1

62.539

93.623

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

93.043

0.571