Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS78_RS21005 Genome accession   NZ_CP085442
Coordinates   4042926..4044164 (-) Length   412 a.a.
NCBI ID   WP_209150618.1    Uniprot ID   -
Organism   Priestia megaterium strain KF18     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4037926..4049164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS78_RS20985 (LIS78_21005) spoVS 4038486..4038746 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LIS78_RS20990 (LIS78_21010) - 4038970..4039767 (-) 798 WP_252284306.1 TIGR00282 family metallophosphoesterase -
  LIS78_RS20995 (LIS78_21015) rny 4039849..4041408 (-) 1560 WP_013058803.1 ribonuclease Y -
  LIS78_RS21000 (LIS78_21020) recA 4041689..4042726 (-) 1038 WP_195782030.1 recombinase RecA Machinery gene
  LIS78_RS21005 (LIS78_21025) cinA 4042926..4044164 (-) 1239 WP_209150618.1 competence/damage-inducible protein A Machinery gene
  LIS78_RS21010 (LIS78_21030) pgsA 4044184..4044768 (-) 585 WP_195782028.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS78_RS21015 (LIS78_21035) - 4044913..4045881 (-) 969 WP_252284307.1 RodZ domain-containing protein -
  LIS78_RS21020 (LIS78_21040) - 4045894..4046685 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  LIS78_RS21025 (LIS78_21045) - 4046899..4047159 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  LIS78_RS21030 (LIS78_21050) - 4047225..4047950 (-) 726 WP_252284308.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44827.84 Da        Isoelectric Point: 5.0876

>NTDB_id=618147 LIS78_RS21005 WP_209150618.1 4042926..4044164(-) (cinA) [Priestia megaterium strain KF18]
MNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKET
IASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPMY
ESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEVE
KTISERVGEYLYGYETTSLHNELVKELKAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSEH
TLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVHIGVAYKDQTPQVYSLQLSGSRQGIRSRTVN
YGCHYVLKTIKK

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=618147 LIS78_RS21005 WP_209150618.1 4042926..4044164(-) (cinA) [Priestia megaterium strain KF18]
ATGAACGCTGAAATTATTGGAGTCGGTTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATCGAA
AAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGATTG
CTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAAACA
ATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTCAAA
TCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTGGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAATGG
CTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCGGGGCCGCCAAAAGAGCTCTATCCAATGTAT
GAATCATATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTTCGG
AATAGGGGAATCACAGCTTGAAACTGAGATTGAAGATTTGCTTGATGCGCAAACAAACCCGACGATTGCGCCGCTTGCAG
GGGATGGAGAAGTAACGCTCCGCTTAACTGCCAAGCATGCTGATGCCGCTGAAGCACAGCGCATGTTAGACGAAGTGGAA
AAAACCATTTCAGAGCGCGTAGGCGAGTATTTGTATGGCTATGAAACAACTTCTTTACATAATGAATTGGTGAAAGAATT
GAAGGCACAAGGATTAACGATTGCTTCGGCTGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTCTAACAACTGTTTCAG
GTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAACAC
ACGCTGAATCAGTACGGAGCCGTTAGCGAGCAATGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAACGGA
TATTGGCATCGGTTTTACAGGTGTAGCTGGACCCTCAAAGCAAGAAGGACATCCTGTAGGAACAGTGCATATAGGGGTCG
CTTATAAGGATCAAACTCCTCAAGTTTACAGCTTACAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTTAAT
TACGGCTGTCATTACGTATTAAAGACGATAAAGAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.756

99.515

0.595
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.481
  cinA Streptococcus mitis SK321

46.667

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.429

100

0.473
  cinA Streptococcus pneumoniae Rx1

45.952

100

0.468
  cinA Streptococcus pneumoniae R6

45.952

100

0.468
  cinA Streptococcus pneumoniae D39

45.714

100

0.466
  cinA Streptococcus mutans UA159

44.928

100

0.451