Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT38_RS09835 Genome accession   NZ_CP085394
Coordinates   1914137..1915177 (+) Length   346 a.a.
NCBI ID   WP_206836583.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1909137..1920177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS09810 (LIT38_09825) - 1909667..1909924 (+) 258 WP_206836571.1 DUF3243 domain-containing protein -
  LIT38_RS09815 (LIT38_09830) - 1910157..1910948 (+) 792 WP_252217801.1 YmfK family protein -
  LIT38_RS09820 (LIT38_09835) - 1910970..1911890 (+) 921 WP_221877861.1 RodZ domain-containing protein -
  LIT38_RS09825 (LIT38_09840) pgsA 1912011..1912589 (+) 579 WP_243508461.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT38_RS09830 (LIT38_09845) cinA 1912616..1913866 (+) 1251 WP_243508462.1 competence/damage-inducible protein A Machinery gene
  LIT38_RS09835 (LIT38_09850) recA 1914137..1915177 (+) 1041 WP_206836583.1 recombinase RecA Machinery gene
  LIT38_RS09840 (LIT38_09855) rny 1915599..1917161 (+) 1563 WP_252218101.1 ribonuclease Y -
  LIT38_RS09845 (LIT38_09860) - 1917291..1918088 (+) 798 WP_221877865.1 TIGR00282 family metallophosphoesterase -
  LIT38_RS09850 (LIT38_09865) spoVS 1918370..1918630 (+) 261 WP_026585459.1 stage V sporulation protein SpoVS -
  LIT38_RS09855 (LIT38_09870) - 1918785..1919708 (+) 924 WP_243508463.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37633.86 Da        Isoelectric Point: 4.8579

>NTDB_id=617512 LIT38_RS09835 WP_206836583.1 1914137..1915177(+) (recA) [Bacillus sp. CMF12]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRKISTAPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSFNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDEDKVISGDEEQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=617512 LIT38_RS09835 WP_206836583.1 1914137..1915177(+) (recA) [Bacillus sp. CMF12]
GTGAGTGATCGTCAAGCAGCTCTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTATTATGAAGCT
TGGTGAACAGACTGACCGCAAAATTTCCACTGCACCAAGCGGATCCCTTGCCCTTGATGCAGCTCTTGGGGTAGGCGGCT
ACCCAAGAGGACGTATTATTGAAATTTATGGACCTGAGAGCTCTGGTAAAACAACAGTAGCCCTGCATGCAATTGCAGAG
GTTCAGGCAAGCGGCGGACAAGCTGCTTTTATCGATGCTGAACATGCTCTAGACCCTGTTTATGCACAAAAGCTTGGTGT
AAATATTGACGAGCTTCTTCTTTCCCAGCCGGATACAGGTGAGCAGGCGCTTGAAATTGCAGAAGCTCTTGTTCGAAGCG
GCGCTGTTGATATCCTGGTAATTGACTCTGTTGCAGCCCTTGTGCCAAAGGCTGAAATTGAAGGGGAAATGGGTGACTCC
CATGTTGGTTTGCAGGCCCGCCTTATGTCCCAGGCACTTCGTAAACTATCTGGTGCAATCAACAAATCTAAAACCATTGC
GATTTTCATTAACCAGATCCGTGAAAAAGTCGGAGTTATGTTCGGAAACCCTGAAACCACTCCTGGCGGACGCGCATTGA
AATTCTATTCTTCTGTCCGTCTTGAAGTACGCCGTGCAGAAACCCTTAAGCAGGGCAATGAAATGGTTGGTAATAAGACA
AAAATCAAAGTTGTCAAAAACAAAGTCGCTCCGCCATTCAGAGTAGCGGAAGTAGATATCATGTACGGTGAAGGAATCTC
GAAGGAAGGCGAAATCATCGATCTTGGATCTGAACTGGATATTGTCCAAAAGAGCGGTTCATGGTACTCATTTAACGAAG
AGCGCTTAGGCCAAGGCCGTGAAAACGCCAAAGTATTCCTAAAAGAAAACCCGGAAATCCGCCTCACTATCCAAAAACAA
ATCCGTGAACACTACGGACTTGACGAAGATAAAGTAATCAGCGGAGACGAAGAGCAGGAAGAATTCGAGCTTATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.39

96.243

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

98.266

0.717
  recA Streptococcus pneumoniae Rx1

67.723

100

0.679
  recA Streptococcus pneumoniae D39

67.723

100

0.679
  recA Streptococcus pneumoniae R6

67.723

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.723

100

0.679
  recA Streptococcus mitis SK321

67.638

99.133

0.671
  recA Streptococcus mitis NCTC 12261

69.394

95.376

0.662
  recA Streptococcus mutans UA159

68.373

95.954

0.656
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Lactococcus lactis subsp. cremoris KW2

66.366

96.243

0.639
  recA Ralstonia pseudosolanacearum GMI1000

66.055

94.509

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.422

97.977

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.509

0.621
  recA Vibrio cholerae strain A1552

66.044

92.775

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.775

0.613
  recA Helicobacter pylori 26695

61.988

98.844

0.613
  recA Helicobacter pylori strain NCTC11637

61.988

98.844

0.613
  recA Glaesserella parasuis strain SC1401

60.983

100

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Acinetobacter baylyi ADP1

60

99.711

0.598
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Acinetobacter baumannii D1279779

62.733

93.064

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.486

0.564