Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT38_RS09830 Genome accession   NZ_CP085394
Coordinates   1912616..1913866 (+) Length   416 a.a.
NCBI ID   WP_243508462.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1907616..1918866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS09805 (LIT38_09820) - 1908828..1909550 (+) 723 WP_252217799.1 SDR family oxidoreductase -
  LIT38_RS09810 (LIT38_09825) - 1909667..1909924 (+) 258 WP_206836571.1 DUF3243 domain-containing protein -
  LIT38_RS09815 (LIT38_09830) - 1910157..1910948 (+) 792 WP_252217801.1 YmfK family protein -
  LIT38_RS09820 (LIT38_09835) - 1910970..1911890 (+) 921 WP_221877861.1 RodZ domain-containing protein -
  LIT38_RS09825 (LIT38_09840) pgsA 1912011..1912589 (+) 579 WP_243508461.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT38_RS09830 (LIT38_09845) cinA 1912616..1913866 (+) 1251 WP_243508462.1 competence/damage-inducible protein A Machinery gene
  LIT38_RS09835 (LIT38_09850) recA 1914137..1915177 (+) 1041 WP_206836583.1 recombinase RecA Machinery gene
  LIT38_RS09840 (LIT38_09855) rny 1915599..1917161 (+) 1563 WP_252218101.1 ribonuclease Y -
  LIT38_RS09845 (LIT38_09860) - 1917291..1918088 (+) 798 WP_221877865.1 TIGR00282 family metallophosphoesterase -
  LIT38_RS09850 (LIT38_09865) spoVS 1918370..1918630 (+) 261 WP_026585459.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45263.84 Da        Isoelectric Point: 4.7448

>NTDB_id=617511 LIT38_RS09830 WP_243508462.1 1912616..1913866(+) (cinA) [Bacillus sp. CMF12]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLKSVIKIAEVRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTDRVMTENNKKQALVLEDAQVLPNEHGMAPGMISDNGGHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTDDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLMDETE
AKILDRVGEFFYGYDDTSLMHELTKLIKENNMTISAAESLTGGMFQQEFTSIPGAGSLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNSDIGISFTGVAGPDELEGNPVGTVYIGIWIKGKLVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKESQSA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=617511 LIT38_RS09830 WP_243508462.1 1912616..1913866(+) (cinA) [Bacillus sp. CMF12]
ATGAATGCAGAAATTATAGCTGTCGGGTCTGAGCTTTTACTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAATGTTTTTTACCATACAGTGGTTGGCGATAACCCTGAGCGCCTGAAGTCTGTGATCA
AAATTGCGGAAGTTCGATCAGATCTGATCGTTTTCACTGGCGGGCTGGGGCCGACAAAGGATGATTTGACGAAAGAAACG
ATTGCCCGCCATCTTGGCAAAGAGCTTGTCATGGATGAACAGGCGCTTGAATCCATACAGCTGTATTTTAAACGGACCGA
CAGAGTGATGACTGAAAATAATAAAAAACAGGCTCTTGTACTTGAGGATGCACAAGTGCTACCTAACGAGCATGGAATGG
CTCCTGGAATGATTTCCGATAATGGCGGGCATGTTTTTATGCTCCTCCCGGGACCGCCAAATGAAATGGAGCCTATGTTC
CTGAAACATGCTTTTCCAGCCCTGCAATCCAAGCTGGGCACAGATGATGTGATTGTTTCCCGGGTATTGCACTTTTTCGG
GATTGGAGAAGCCATGCTTGAAACTGAGATTGAAGATATTATCGATGCGCAGAGTAATCCAACGATTGCCCCGCTTGCCT
CTGATGGGGAAGTCACGCTAAGGCTTACGGCAAAGCATAGCCAGCCTAACACTGCTATGATGCTGATGGATGAAACTGAA
GCCAAGATCCTCGATCGTGTCGGTGAATTCTTCTATGGCTACGATGACACTTCCTTGATGCATGAGCTTACCAAGCTGAT
CAAGGAAAACAATATGACTATTTCTGCTGCTGAGAGTTTAACAGGCGGCATGTTCCAGCAGGAGTTTACATCTATTCCGG
GAGCAGGCAGTCTTCTAAAAGGCGGAGTGGTTTGTTATACAAACGAAGTTAAGGCTGAAGTTTTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTCGTCAGTGCTCAGTGTGCAGCAGAGCTTGCTGAGAATGTAGCCAGTCTGACTAACTCAGA
TATCGGGATCAGCTTCACAGGTGTTGCAGGTCCTGACGAACTGGAAGGCAACCCGGTGGGAACCGTATATATAGGCATCT
GGATAAAAGGTAAGCTTGTCCAGACTGAAAAGCTGAACCTTGGGGGAACCAGGGCAGCAAACCGGGTCCGTACGGTAAAA
TACGGCTGCCATTTTCTTATAAAAGCATTAAAAGAAAGTCAGAGCGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.287

98.798

0.615
  cinA Streptococcus mitis SK321

47.619

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.619

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.143

100

0.476
  cinA Streptococcus pneumoniae R6

47.143

100

0.476
  cinA Streptococcus pneumoniae D39

46.905

100

0.474
  cinA Streptococcus mutans UA159

47.395

96.875

0.459
  cinA Streptococcus suis isolate S10

38.931

94.471

0.368