Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT27_RS10330 Genome accession   NZ_CP085392
Coordinates   1986497..1987537 (+) Length   346 a.a.
NCBI ID   WP_009330669.1    Uniprot ID   A0A160MAD2
Organism   Cytobacillus oceanisediminis strain CK22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1981497..1992537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS10305 (LIT27_10330) - 1982024..1982281 (+) 258 WP_009330675.1 DUF3243 domain-containing protein -
  LIT27_RS10310 (LIT27_10335) - 1982515..1983306 (+) 792 WP_009330674.1 YmfK family protein -
  LIT27_RS10315 (LIT27_10340) - 1983328..1984248 (+) 921 WP_019381798.1 RodZ domain-containing protein -
  LIT27_RS10320 (LIT27_10345) pgsA 1984369..1984947 (+) 579 WP_009330671.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT27_RS10325 (LIT27_10350) cinA 1984975..1986225 (+) 1251 WP_192908440.1 competence/damage-inducible protein A Machinery gene
  LIT27_RS10330 (LIT27_10355) recA 1986497..1987537 (+) 1041 WP_009330669.1 recombinase RecA Machinery gene
  LIT27_RS10335 (LIT27_10360) rny 1988313..1989875 (+) 1563 WP_019381799.1 ribonuclease Y -
  LIT27_RS10340 (LIT27_10365) - 1990005..1990802 (+) 798 WP_251264119.1 TIGR00282 family metallophosphoesterase -
  LIT27_RS10345 (LIT27_10370) spoVS 1991084..1991344 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  LIT27_RS10350 (LIT27_10375) - 1991466..1992422 (+) 957 WP_197198918.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37563.73 Da        Isoelectric Point: 4.8474

>NTDB_id=617459 LIT27_RS10330 WP_009330669.1 1986497..1987537(+) (recA) [Cytobacillus oceanisediminis strain CK22]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRKISTAPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDGDKVISGDEEQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=617459 LIT27_RS10330 WP_009330669.1 1986497..1987537(+) (recA) [Cytobacillus oceanisediminis strain CK22]
GTGAGTGATCGTCAAGCAGCTCTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTATTATGAAGCT
TGGTGAACAGACTGACCGCAAAATTTCCACTGCACCAAGCGGATCCCTTGCCCTTGATGCAGCTCTTGGGGTAGGGGGCT
ATCCAAGAGGACGCATTATTGAAATTTATGGACCTGAGAGCTCAGGTAAAACAACTGTAGCCCTGCATGCAATTGCAGAG
GTTCAGGCAAGCGGCGGACAAGCTGCTTTTATCGATGCTGAACATGCTCTAGACCCTGTTTATGCACAAAATCTTGGTGT
GAATATTGATGAGCTTTTACTTTCCCAGCCGGATACAGGAGAGCAGGCACTTGAAATTGCAGAAGCACTTGTTCGAAGCG
GAGCTGTTGATATTCTGGTAATTGACTCTGTTGCAGCCCTTGTGCCAAAGGCTGAAATTGAAGGGGAAATGGGTGATTCC
CATGTTGGTTTGCAGGCCCGCCTTATGTCCCAGGCACTTCGTAAACTATCAGGCGCAATCAACAAATCTAAAACCATTGC
GATTTTCATTAACCAGATCCGTGAAAAAGTCGGAGTTATGTTCGGAAACCCTGAAACCACTCCTGGCGGACGCGCTTTGA
AATTCTACTCTTCTGTCCGTCTTGAAGTGCGCCGTGCAGAAACTCTTAAGCAGGGCAATGAAATGGTTGGTAATAAGACA
AAGATCAAAGTTGTCAAAAACAAAGTCGCACCTCCATTCAGAGTGGCGGAAGTAGATATCATGTACGGTGAAGGAATCTC
TAAGGAAGGCGAAATCATCGATCTTGGCTCTGAACTGGATATTGTCCAAAAGAGCGGCTCATGGTACTCATACAATGAAG
AGCGCCTTGGCCAAGGCCGTGAAAACGCCAAAGTATTCCTAAAAGAAAACCCTGAAATCCGCCTCACTATCCAAAAACAA
ATCCGTGAACACTATGGACTTGATGGAGATAAAGTAATCAGCGGAGACGAAGAGCAGGAAGAATTCGAGCTGATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160MAD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.39

96.243

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

75.385

93.931

0.708
  recA Streptococcus pneumoniae R6

68.3

100

0.685
  recA Streptococcus pneumoniae TIGR4

68.3

100

0.685
  recA Streptococcus pneumoniae D39

68.3

100

0.685
  recA Streptococcus pneumoniae Rx1

68.3

100

0.685
  recA Streptococcus mitis SK321

67.93

99.133

0.673
  recA Streptococcus mitis NCTC 12261

69.048

97.11

0.671
  recA Streptococcus mutans UA159

68.997

95.087

0.656
  recA Streptococcus pyogenes NZ131

68.293

94.798

0.647
  recA Lactococcus lactis subsp. cremoris KW2

66.97

95.376

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.307

97.977

0.63
  recA Ralstonia pseudosolanacearum GMI1000

66.055

94.509

0.624
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.509

0.621
  recA Glaesserella parasuis strain SC1401

61.561

100

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.775

0.613
  recA Vibrio cholerae strain A1552

66.044

92.775

0.613
  recA Helicobacter pylori strain NCTC11637

61.988

98.844

0.613
  recA Helicobacter pylori 26695

61.988

98.844

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Acinetobacter baumannii D1279779

60.35

99.133

0.598
  recA Acinetobacter baylyi ADP1

60

99.711

0.598
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566