Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT27_RS10325 Genome accession   NZ_CP085392
Coordinates   1984975..1986225 (+) Length   416 a.a.
NCBI ID   WP_192908440.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain CK22     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1979975..1991225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT27_RS10300 (LIT27_10325) - 1981184..1981906 (+) 723 WP_009330676.1 SDR family oxidoreductase -
  LIT27_RS10305 (LIT27_10330) - 1982024..1982281 (+) 258 WP_009330675.1 DUF3243 domain-containing protein -
  LIT27_RS10310 (LIT27_10335) - 1982515..1983306 (+) 792 WP_009330674.1 YmfK family protein -
  LIT27_RS10315 (LIT27_10340) - 1983328..1984248 (+) 921 WP_019381798.1 RodZ domain-containing protein -
  LIT27_RS10320 (LIT27_10345) pgsA 1984369..1984947 (+) 579 WP_009330671.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT27_RS10325 (LIT27_10350) cinA 1984975..1986225 (+) 1251 WP_192908440.1 competence/damage-inducible protein A Machinery gene
  LIT27_RS10330 (LIT27_10355) recA 1986497..1987537 (+) 1041 WP_009330669.1 recombinase RecA Machinery gene
  LIT27_RS10335 (LIT27_10360) rny 1988313..1989875 (+) 1563 WP_019381799.1 ribonuclease Y -
  LIT27_RS10340 (LIT27_10365) - 1990005..1990802 (+) 798 WP_251264119.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45271.91 Da        Isoelectric Point: 4.9251

>NTDB_id=617458 LIT27_RS10325 WP_192908440.1 1984975..1986225(+) (cinA) [Cytobacillus oceanisediminis strain CK22]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHSVVGDNPERLKSVIKIAEDRSDLIVFTGGLGPTKDDLTKET
IARHLGKKLVMDEQALESIQMYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMISDNGGHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTDDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLMDETE
AKILGRVGEFFYGYDDTSLMHELTKLIKENNMTISAAESLTGGMFQQEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNYGVVSAQCAAELAENVASLTNSDIGISFTGVAGPDELEGNPVGTVYIGIWIKGKPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKECQSA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=617458 LIT27_RS10325 WP_192908440.1 1984975..1986225(+) (cinA) [Cytobacillus oceanisediminis strain CK22]
ATGAATGCAGAAATTATAGCTGTCGGGTCTGAGCTTTTACTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAATGTTTTTTACCATTCAGTGGTTGGCGATAACCCTGAGCGCCTGAAGTCTGTGATCA
AAATTGCGGAAGATCGATCAGATCTGATCGTTTTCACTGGCGGGCTGGGGCCGACAAAAGATGATTTGACGAAAGAAACG
ATTGCCCGCCATCTAGGCAAAAAGCTTGTCATGGATGAGCAGGCGCTTGAATCCATACAGATGTATTTTAAACGGACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAAGCACTTGTACTTGAGGATGCACAAGTACTTCCTAACGAGCATGGAATGG
CTCCTGGAATGATTTCCGATAATGGCGGGCATGTTTTTATGCTACTTCCGGGACCTCCAAATGAAATGGAGCCTATGTTC
CTGAAACATGCTTTTCCGGCCCTGCAATCCAAGCTGGGCACAGATGATGTGATTGTTTCCCGGGTATTGCACTTTTTCGG
GATTGGAGAAGCCATGCTTGAAACTGAGATTGAAGATATTATCGATGCGCAGAGTAATCCAACAATTGCTCCGCTTGCCT
CTGACGGAGAAGTCACGCTAAGGCTTACGGCAAAGCATAGCCAGCCTAACACGGCAATGATGCTGATGGATGAAACTGAA
GCTAAAATCCTCGGCCGTGTCGGCGAATTCTTCTATGGCTACGATGACACTTCCTTGATGCATGAGCTCACCAAGCTGAT
CAAGGAAAACAATATGACTATTTCCGCTGCTGAGAGTTTAACAGGCGGCATGTTTCAGCAGGAGTTTACATCCATTCCGG
GAGCAGGCGGTCTTCTAAAAGGCGGAGTGGTTTGCTATACAAACGAAGTTAAGGCTGAGGTTTTAAAAGTTCGCAAAGAA
ACGATTGATAACTACGGGGTCGTCAGTGCTCAGTGTGCAGCAGAGCTTGCTGAGAATGTCGCCAGTCTGACTAACTCAGA
TATCGGAATCAGCTTCACAGGTGTTGCTGGTCCTGACGAACTGGAAGGCAACCCGGTGGGAACCGTATATATAGGCATCT
GGATAAAAGGTAAGCCTGTCCAGACTGAAAAGCTGAACCTTGGGGGAACCAGGGCGGCAAACCGTGTCCGTACGGTAAAA
TATGGCTGCCATTTTCTTATAAAAGCATTAAAAGAATGTCAGAGCGCCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.195

98.558

0.613
  cinA Streptococcus mitis SK321

46.905

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.667

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.429

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.19

100

0.466
  cinA Streptococcus pneumoniae R6

46.19

100

0.466
  cinA Streptococcus pneumoniae D39

45.952

100

0.464
  cinA Streptococcus mutans UA159

46.65

96.875

0.452
  cinA Streptococcus suis isolate S10

38.168

94.471

0.361