Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NUW85_RS05930 Genome accession   NZ_CP102603
Coordinates   1313996..1315156 (-) Length   386 a.a.
NCBI ID   WP_139885209.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBLB0692     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1308996..1320156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUW85_RS05905 (NUW85_05905) - 1309236..1309922 (+) 687 WP_003155022.1 lytic transglycosylase domain-containing protein -
  NUW85_RS05910 (NUW85_05910) - 1310151..1310549 (+) 399 WP_003155023.1 thiol management oxidoreductase -
  NUW85_RS05915 (NUW85_05915) spxH 1310546..1311448 (+) 903 WP_024085126.1 protease adaptor protein SpxH -
  NUW85_RS05920 (NUW85_05920) - 1311734..1311901 (+) 168 WP_003155026.1 hypothetical protein -
  NUW85_RS05925 (NUW85_05925) pepF 1311939..1313768 (-) 1830 WP_003155028.1 oligoendopeptidase F Regulator
  NUW85_RS05930 (NUW85_05930) coiA 1313996..1315156 (-) 1161 WP_139885209.1 competence protein CoiA family protein Machinery gene
  NUW85_RS05935 (NUW85_05935) mecA 1315307..1315963 (-) 657 WP_003155032.1 adaptor protein MecA Regulator
  NUW85_RS05940 (NUW85_05940) - 1315946..1316056 (-) 111 Protein_1183 adaptor protein MecA -
  NUW85_RS05945 (NUW85_05945) - 1316239..1316895 (+) 657 WP_057080091.1 TerC family protein -
  NUW85_RS05950 (NUW85_05950) spx 1316953..1317348 (-) 396 WP_003155034.1 transcriptional regulator Spx -
  NUW85_RS05955 (NUW85_05955) - 1317527..1318105 (-) 579 WP_003155035.1 GNAT family N-acetyltransferase -
  NUW85_RS05960 (NUW85_05960) - 1318223..1319410 (-) 1188 WP_003155036.1 putative glycoside hydrolase -

Sequence


Protein


Download         Length: 386 a.a.        Molecular weight: 44349.12 Da        Isoelectric Point: 10.0426

>NTDB_id=617405 NUW85_RS05930 WP_139885209.1 1313996..1315156(-) (coiA) [Bacillus amyloliquefaciens strain MBLB0692]
MFSAVTAGGRLIQLAGSYSKEKAAELRKKRWFCPVCKSELDIKLGREKLPHFAHKKSRLCPGESEPESEYHLEGKRQLFL
WLKTQGCSVSLEPYLTSAGQRPDLTAESGEERLAFEFQCANLSADSLKSRTAGLKNAGYRPVWIIGAKRLKRMAAQFFRL
SAFHWQFFEVNSFSSLMFYCPDARSFYRLHSITPFYTGYSYAGLTAIPLHKANLKDICHPEGRHSVRLSSWGRAVAGFRN
KDGRFLSEDAGLIRRLFYERHQVAFPFLPSEVFIPVSAGFVFASPVFVWQGHLYLRLAELSKKGAPIRLSGMVHDLRQKI
RHKEIRMRYGSQDSLIGMAVKQYADFLCLQDFLREIENEVYMPSSQQKRPQTAEELRRRDMLFFGE

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=617405 NUW85_RS05930 WP_139885209.1 1313996..1315156(-) (coiA) [Bacillus amyloliquefaciens strain MBLB0692]
ATGTTCAGTGCAGTGACTGCCGGCGGACGGCTCATTCAGCTGGCCGGAAGCTATTCAAAGGAAAAAGCGGCGGAGCTGAG
AAAGAAACGCTGGTTCTGCCCCGTTTGCAAAAGTGAGCTTGATATCAAACTGGGACGCGAGAAACTGCCGCACTTCGCTC
ATAAAAAAAGCAGGCTGTGCCCCGGGGAATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGACAGCTTTTTCTC
TGGCTGAAGACACAAGGGTGCAGTGTCAGCCTGGAACCGTATCTGACTTCCGCTGGACAGCGGCCTGACTTGACGGCAGA
AAGCGGAGAAGAAAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCGGCGGACTCTTTAAAGAGCCGGACGGCAGGCC
TGAAAAACGCCGGGTACCGGCCGGTCTGGATCATTGGGGCAAAACGGTTAAAACGGATGGCCGCGCAATTTTTCCGGCTT
TCTGCTTTTCACTGGCAGTTCTTTGAAGTCAATTCATTTTCCTCCTTAATGTTTTACTGCCCCGACGCCCGCTCCTTTTA
CAGGCTGCATTCCATCACTCCGTTTTACACCGGCTATTCTTATGCCGGCTTAACCGCAATCCCTCTTCACAAAGCAAACC
TGAAAGACATTTGTCATCCGGAAGGGCGGCACAGCGTCAGACTTTCCTCGTGGGGGCGTGCCGTTGCCGGCTTCCGCAAC
AAAGACGGGCGGTTTTTATCTGAAGATGCCGGTCTTATCCGGCGTCTTTTTTACGAAAGACATCAGGTTGCATTTCCATT
TCTCCCCTCTGAAGTGTTTATTCCCGTTTCAGCAGGCTTTGTGTTTGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTAT
ACTTGCGGCTTGCGGAACTTTCTAAAAAAGGCGCGCCGATCCGATTATCCGGCATGGTTCATGATTTACGGCAAAAAATC
AGGCATAAGGAGATCCGGATGCGGTATGGTTCACAAGACAGCCTTATCGGAATGGCGGTAAAACAATATGCTGATTTCTT
ATGCTTGCAGGATTTTTTAAGGGAAATTGAGAATGAAGTATATATGCCCTCATCCCAACAGAAGCGCCCTCAAACGGCAG
AAGAGCTGCGCCGGCGGGACATGCTCTTTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

46.277

97.409

0.451