Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS77_RS09575 Genome accession   NZ_CP085390
Coordinates   1832013..1833263 (+) Length   416 a.a.
NCBI ID   WP_222496943.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1827013..1838263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS09550 (LIS77_09560) - 1827847..1828569 (+) 723 WP_222496946.1 SDR family oxidoreductase -
  LIS77_RS09555 (LIS77_09565) - 1828685..1828942 (+) 258 WP_061791010.1 DUF3243 domain-containing protein -
  LIS77_RS09560 (LIS77_09570) - 1829176..1829967 (+) 792 WP_035330727.1 YmfK family protein -
  LIS77_RS09565 (LIS77_09575) - 1829989..1830894 (+) 906 WP_252221528.1 RodZ domain-containing protein -
  LIS77_RS09570 (LIS77_09580) pgsA 1831408..1831986 (+) 579 WP_222496944.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS77_RS09575 (LIS77_09585) cinA 1832013..1833263 (+) 1251 WP_222496943.1 competence/damage-inducible protein A Machinery gene
  LIS77_RS09580 (LIS77_09590) recA 1833537..1834577 (+) 1041 WP_048008962.1 recombinase RecA Machinery gene
  LIS77_RS09585 (LIS77_09595) rny 1834946..1836508 (+) 1563 WP_048008961.1 ribonuclease Y -
  LIS77_RS09590 (LIS77_09600) - 1836638..1837435 (+) 798 WP_163141658.1 TIGR00282 family metallophosphoesterase -
  LIS77_RS09595 (LIS77_09605) spoVS 1837767..1838027 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45332.85 Da        Isoelectric Point: 4.7060

>NTDB_id=617404 LIS77_RS09575 WP_222496943.1 1832013..1833263(+) (cinA) [Cytobacillus firmus strain CK19]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRQVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRVTAKHSQPNTAMMLINEAE
SKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=617404 LIS77_RS09575 WP_222496943.1 1832013..1833263(+) (cinA) [Cytobacillus firmus strain CK19]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTGCTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCAGAGCGCCTGAGATCGGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTGATCGTCTTCACGGGCGGCCTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCCCGCCATCTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGAATCTATACAGCTGTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAGGTGCTTCCTAATGAGCATGGAATGG
CACCAGGAATGATTGCCGATAGTGGCCGGCAAGTGTTCATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCAGCCCTGCAATCCAAGCTGGGAACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAGATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCTT
CTGATGGGGAAGTTACTCTGAGGGTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
TCTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTCCAGGAAGAGTTTACATCCATTCCGG
GAGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTCGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGTATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTATATATAGGCATTT
GGATAAAAGGAAGGCCGGTGCAGACCGAAAAGCTGAACCTTGGAGGTACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.071

98.798

0.603
  cinA Streptococcus mitis SK321

46.19

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.714

100

0.462
  cinA Streptococcus mitis NCTC 12261

45.714

100

0.462
  cinA Streptococcus mutans UA159

45.346

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.238

100

0.457
  cinA Streptococcus pneumoniae R6

45.238

100

0.457
  cinA Streptococcus pneumoniae D39

45

100

0.454
  cinA Streptococcus suis isolate S10

38.677

94.471

0.365