Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QMN35_RS06270 Genome accession   NZ_AP019538
Coordinates   1297226..1297963 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain THO-008     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292226..1302963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMN35_RS06240 (ECTHO008_011990) yfiL 1292385..1292750 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  QMN35_RS06245 (ECTHO008_012000) aroF 1292959..1294029 (+) 1071 WP_001168050.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QMN35_RS06250 (ECTHO008_012010) tyrA 1294040..1295161 (+) 1122 WP_000225203.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QMN35_RS06255 (ECTHO008_012020) pheA 1295204..1296364 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  QMN35_RS06260 pheL 1296464..1296511 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QMN35_RS06265 (ECTHO008_012030) raiA 1296615..1296956 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QMN35_RS06270 (ECTHO008_012040) comL 1297226..1297963 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QMN35_RS06275 (ECTHO008_012050) rluD 1298098..1299078 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMN35_RS06280 (ECTHO008_012060) yfiH 1299075..1299806 (+) 732 WP_000040155.1 purine nucleoside phosphorylase YfiH -
  QMN35_RS06285 (ECTHO008_012070) clpC 1299936..1302509 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=61694 QMN35_RS06270 WP_000197686.1 1297226..1297963(-) (comL) [Escherichia coli strain THO-008]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=61694 QMN35_RS06270 WP_000197686.1 1297226..1297963(-) (comL) [Escherichia coli strain THO-008]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAAATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment