Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG307_RS10040 Genome accession   NZ_CP085237
Coordinates   1930379..1931416 (+) Length   345 a.a.
NCBI ID   WP_404450126.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1925379..1936416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS10015 (LG307_09950) - 1926013..1926270 (+) 258 WP_404450123.1 DUF3243 domain-containing protein -
  LG307_RS10020 (LG307_09955) - 1926409..1927200 (+) 792 WP_010193276.1 DUF3388 domain-containing protein -
  LG307_RS10025 (LG307_09960) - 1927222..1928115 (+) 894 WP_404450124.1 RodZ domain-containing protein -
  LG307_RS10030 (LG307_09965) pgsA 1928260..1928844 (+) 585 WP_223493376.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG307_RS10035 (LG307_09970) cinA 1928869..1930113 (+) 1245 WP_404450125.1 competence/damage-inducible protein A Machinery gene
  LG307_RS10040 (LG307_09975) recA 1930379..1931416 (+) 1038 WP_404450126.1 recombinase RecA Machinery gene
  LG307_RS10045 (LG307_09980) rny 1931753..1933315 (+) 1563 WP_404450428.1 ribonuclease Y -
  LG307_RS10050 (LG307_09985) - 1933418..1934212 (+) 795 WP_404450429.1 TIGR00282 family metallophosphoesterase -
  LG307_RS10055 (LG307_09990) spoVS 1934366..1934626 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -
  LG307_RS10060 (LG307_09995) - 1934717..1935655 (+) 939 WP_404450430.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37543.78 Da        Isoelectric Point: 5.3399

>NTDB_id=616223 LG307_RS10040 WP_404450126.1 1930379..1931416(+) (recA) [Sutcliffiella horikoshii strain ADH2-198]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQAERKISTMPSGSLALDVALGAGGYPRGRVVEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT
KIKVVKNKIAPPFKVAEVDIMYGEGISGEGEVIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENKDILKEIHQK
IRDHHGLDKEVNAPAEEMDQEELDF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=616223 LG307_RS10040 WP_404450126.1 1930379..1931416(+) (recA) [Sutcliffiella horikoshii strain ADH2-198]
GTGAGTGATCGTAAAGCTGCATTAGATATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAATT
GGGTGAACAGGCAGAACGTAAGATCTCCACTATGCCGAGTGGTTCGTTGGCATTGGACGTTGCATTAGGTGCTGGAGGAT
ACCCACGAGGTAGAGTGGTAGAAATATATGGTCCGGAATCTTCCGGTAAAACAACGGTTGCCCTTCATGCGATCGCTGAA
GTACAGCAACAAGGCGGACAAGCTGCATTTATCGATGCCGAGCACGCGCTGGATCCTGTGTATGCACAAAAACTTGGCGT
AAACATAGACGAGCTTCTTCTATCCCAGCCAGATACCGGTGAGCAGGCATTGGAAATCGCAGAAGCCCTAGTAAGAAGTG
GAGCGGTTGACATCATCGTTGTCGATTCTGTAGCGGCTCTAGTACCAAAAGCGGAAATCGAAGGGGAAATGGGGGACTCC
CATGTGGGTCTTCAAGCCCGTTTAATGTCCCAAGCTCTTCGTAAGCTTTCAGGTGCCATCAATAAATCAAAAACCATCGC
TATCTTCATCAACCAGATTCGTGAAAAAGTCGGGGTAATGTTTGGTAATCCTGAAACGACTCCTGGTGGCCGCGCCCTGA
AATTCTACTCTTCCGTACGTTTAGAAGTTCGTCGTGCGGAGCAGTTGAAACAGGGTCATGATATTGTCGGGAACAAAACA
AAGATTAAAGTTGTCAAAAACAAAATAGCTCCTCCTTTCAAAGTAGCTGAAGTTGATATCATGTACGGTGAGGGTATCTC
TGGAGAGGGCGAAGTTATTGATATGGGCTCCGATTTGGATATCGTCCAAAAAAGTGGTTCATGGTATTCCTATAATGAAG
AAAGATTAGGACAAGGACGCGAAAATGCGAAACAATTCCTTAAAGAAAACAAGGATATTCTTAAAGAAATTCACCAGAAA
ATTCGTGACCACCACGGATTGGATAAAGAAGTAAATGCGCCAGCAGAAGAAATGGATCAAGAAGAATTAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.329

95.072

0.849
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

98.551

0.719
  recA Streptococcus mutans UA159

68.895

99.71

0.687
  recA Streptococcus pyogenes NZ131

70.427

95.072

0.67
  recA Streptococcus pneumoniae TIGR4

70

95.652

0.67
  recA Streptococcus pneumoniae R6

70

95.652

0.67
  recA Streptococcus mitis NCTC 12261

70

95.652

0.67
  recA Streptococcus pneumoniae Rx1

70

95.652

0.67
  recA Streptococcus pneumoniae D39

70

95.652

0.67
  recA Streptococcus mitis SK321

69.697

95.652

0.667
  recA Lactococcus lactis subsp. cremoris KW2

67.857

97.391

0.661
  recA Neisseria gonorrhoeae MS11

63.584

100

0.638
  recA Neisseria gonorrhoeae MS11

63.584

100

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

100

0.638
  recA Vibrio cholerae strain A1552

66.044

93.043

0.614
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

93.043

0.614
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.725

0.606
  recA Acinetobacter baylyi ADP1

60.116

100

0.603
  recA Helicobacter pylori strain NCTC11637

60.819

99.13

0.603
  recA Helicobacter pylori 26695

60.819

99.13

0.603
  recA Acinetobacter baumannii D1279779

60.641

99.42

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.882

98.551

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Glaesserella parasuis strain SC1401

63.438

92.754

0.588
  recA Pseudomonas stutzeri DSM 10701

63.125

92.754

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

93.623

0.571