Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG307_RS10035 Genome accession   NZ_CP085237
Coordinates   1928869..1930113 (+) Length   414 a.a.
NCBI ID   WP_404450125.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1923869..1935113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS10005 (LG307_09940) yfmH 1923879..1925162 (+) 1284 WP_404450121.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LG307_RS10010 (LG307_09945) ymfI 1925226..1925942 (+) 717 WP_404450122.1 elongation factor P 5-aminopentanone reductase -
  LG307_RS10015 (LG307_09950) - 1926013..1926270 (+) 258 WP_404450123.1 DUF3243 domain-containing protein -
  LG307_RS10020 (LG307_09955) - 1926409..1927200 (+) 792 WP_010193276.1 DUF3388 domain-containing protein -
  LG307_RS10025 (LG307_09960) - 1927222..1928115 (+) 894 WP_404450124.1 RodZ domain-containing protein -
  LG307_RS10030 (LG307_09965) pgsA 1928260..1928844 (+) 585 WP_223493376.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG307_RS10035 (LG307_09970) cinA 1928869..1930113 (+) 1245 WP_404450125.1 competence/damage-inducible protein A Machinery gene
  LG307_RS10040 (LG307_09975) recA 1930379..1931416 (+) 1038 WP_404450126.1 recombinase RecA Machinery gene
  LG307_RS10045 (LG307_09980) rny 1931753..1933315 (+) 1563 WP_404450428.1 ribonuclease Y -
  LG307_RS10050 (LG307_09985) - 1933418..1934212 (+) 795 WP_404450429.1 TIGR00282 family metallophosphoesterase -
  LG307_RS10055 (LG307_09990) spoVS 1934366..1934626 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45423.89 Da        Isoelectric Point: 5.4529

>NTDB_id=616222 LG307_RS10035 WP_404450125.1 1928869..1930113(+) (cinA) [Sutcliffiella horikoshii strain ADH2-198]
MIRNAEIIAVGSELLLGQICNTNAQYLSKQLAELGINVFYHTVVGDNPSRLEEVITTAKQRSNLLIFTGGLGPTKDDLTK
ETIARVLGKQLVMDEQALINIQDYFKKSHRVMSENNKKQALVLEGSSILANDYGMAPGMALTEDSHTYMLLPGPPKELQP
MFSLHGREFLLDKLGVREQIVSKVLRFFGIGESQLETDIEDIIDQQTNPTIAPLAGDNEVTLRLTAKHQSIDEANRLIAL
CEKEILERVGDYFFGYDEDTIYSVLFEKVQNSHYTLSSAESLTGGLFSEKMTSFTGASEVIEGAIVSYTNSVKEHVLGVK
KQTLETDGAVSAQTAKEMAIGVKKLLQTDIGISFTGVAGPGTMDNQPVGTVFIGLALPNGETAVHKIHLAGTRDGIRHRS
AKYGCHYLLKELFK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=616222 LG307_RS10035 WP_404450125.1 1928869..1930113(+) (cinA) [Sutcliffiella horikoshii strain ADH2-198]
ATGATCAGAAATGCAGAGATTATTGCCGTAGGCTCTGAATTACTGTTGGGACAAATCTGTAACACAAATGCCCAGTATCT
TTCAAAGCAACTTGCTGAGTTAGGCATAAACGTCTTTTACCATACAGTAGTCGGAGATAATCCTTCCAGGCTTGAAGAAG
TCATCACAACAGCAAAACAACGCTCTAATCTTCTGATATTCACAGGAGGACTTGGGCCGACAAAAGATGATCTGACAAAG
GAAACCATTGCAAGAGTGCTTGGTAAGCAGCTGGTCATGGATGAACAAGCGCTGATCAACATCCAAGATTATTTCAAAAA
ATCACACCGTGTGATGAGTGAAAACAACAAAAAGCAGGCACTTGTTTTGGAAGGTTCCTCTATCTTGGCAAACGATTATG
GCATGGCTCCAGGAATGGCGCTTACTGAAGATTCTCATACATATATGCTTTTACCTGGGCCGCCAAAAGAACTTCAGCCA
ATGTTTTCCCTCCACGGCAGAGAATTCCTGTTAGATAAGCTAGGAGTCAGAGAACAGATTGTATCCAAAGTTCTCCGCTT
CTTTGGCATTGGGGAATCACAATTGGAAACGGATATTGAAGATATCATTGACCAACAGACAAATCCCACCATTGCCCCAT
TAGCAGGAGACAATGAAGTTACGCTTAGGTTAACTGCAAAACATCAATCTATCGATGAAGCAAACCGTTTGATTGCCCTT
TGTGAAAAAGAAATTTTAGAAAGAGTCGGTGATTACTTCTTCGGATACGACGAAGACACAATCTACTCCGTTCTTTTTGA
AAAGGTCCAAAACTCTCATTACACGCTGAGCAGTGCTGAAAGTCTTACCGGAGGATTGTTCTCGGAGAAAATGACTAGCT
TCACAGGAGCTTCTGAAGTGATAGAAGGAGCTATTGTCAGCTATACCAATAGTGTTAAGGAACATGTTCTTGGCGTAAAA
AAACAAACACTAGAAACAGATGGAGCAGTTAGTGCGCAGACGGCAAAAGAAATGGCAATCGGTGTAAAAAAACTACTTCA
AACAGATATCGGAATCAGTTTCACAGGAGTTGCAGGTCCAGGAACCATGGACAATCAACCTGTTGGCACAGTGTTTATCG
GATTGGCTCTACCAAATGGAGAAACTGCCGTCCATAAAATTCATTTGGCAGGAACAAGAGATGGCATAAGACATAGATCA
GCAAAATACGGTTGTCACTATTTATTGAAAGAATTATTCAAGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.463

99.034

0.609
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.461
  cinA Streptococcus mitis SK321

45.238

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.107

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.107

100

0.457
  cinA Streptococcus pneumoniae R6

45.107

100

0.457
  cinA Streptococcus pneumoniae D39

44.869

100

0.454
  cinA Streptococcus mutans UA159

43.86

96.377

0.423
  cinA Streptococcus suis isolate S10

41.414

95.652

0.396