Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG336_RS05395 Genome accession   NZ_CP085225
Coordinates   1104119..1105159 (+) Length   346 a.a.
NCBI ID   WP_404331542.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099119..1110159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS05375 (LG336_05370) - 1100045..1100836 (+) 792 WP_404331537.1 DUF3388 domain-containing protein -
  LG336_RS05380 (LG336_05375) - 1100857..1101762 (+) 906 WP_404331539.1 helix-turn-helix domain-containing protein -
  LG336_RS05385 (LG336_05380) pgsA 1101872..1102450 (+) 579 WP_404331540.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG336_RS05390 (LG336_05385) cinA 1102528..1103766 (+) 1239 WP_404331541.1 competence/damage-inducible protein A Machinery gene
  LG336_RS05395 (LG336_05390) recA 1104119..1105159 (+) 1041 WP_404331542.1 recombinase RecA Machinery gene
  LG336_RS05400 (LG336_05395) rny 1105432..1106997 (+) 1566 WP_404331543.1 ribonuclease Y -
  LG336_RS05405 (LG336_05400) - 1107115..1107912 (+) 798 WP_404331544.1 TIGR00282 family metallophosphoesterase -
  LG336_RS05410 (LG336_05405) spoVS 1108277..1108537 (+) 261 WP_090742139.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37593.60 Da        Isoelectric Point: 4.9004

>NTDB_id=616047 LG336_RS05395 WP_404331542.1 1104119..1105159(+) (recA) [Mesobacillus maritimus strain ADH-29]
MSDRQAALDMALKQIEKQFGKGSVMKLGEQSDRRVSTSPSGSITLDVALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQAAGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDIGSELDIVQKSGSWYSYNNERVGQGRENAKQFLKENPSVRLEIQQK
IRDHYGLDGDKPLVESDEDQEELELS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=616047 LG336_RS05395 WP_404331542.1 1104119..1105159(+) (recA) [Mesobacillus maritimus strain ADH-29]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCATTAAAACAAATAGAAAAGCAATTTGGTAAAGGCTCAGTTATGAAGTT
AGGAGAACAATCGGATCGTAGAGTATCTACTAGTCCGAGTGGTTCGATTACGTTGGATGTAGCTTTAGGAATAGGTGGTT
ATCCACGCGGACGTGTAATTGAAATTTATGGACCTGAAAGTTCTGGTAAAACAACTGTATCACTTCATGCAATTGCAGAA
GTACAAGCAGCAGGTGGTCAGGCTGCATTTATTGATGCAGAGCACGCACTAGACCCTGTTTACGCTCAAAAGTTAGGTGT
TAACATTGATGAATTATTGCTTTCTCAGCCAGATACTGGGGAACAAGCACTAGAAATTGCAGAGGCACTTGTACGAAGCG
GTGCGGTTGATATCATTGTTATTGACTCTGTTGCTGCTCTAGTTCCAAAAGCTGAAATCGAAGGTGAAATGGGAGACTCT
CATATGGGACTTCAAGCAAGAATGATGTCCCAGGCTCTTCGTAAGCTGTCAGGTGCTATCAACAAATCCAATACAATTGC
GATTTTCATCAACCAGATTCGTGAAAAGATTGGTGTTATGTTTGGAAATCCAGAGACAACTCCAGGGGGACGTGCGCTTA
AATTCTATTCCAGTGTTCGTCTTGAAGTGCGCCGTGCTGAATCCTTAAAGCAAGGCAATGATATTGTAGGTAACAAAACA
AAAATTAAAGTAGTTAAAAACAAGGTTGCGCCTCCTTTCCGTGTAGCGGAAGTGGATATTATGTACGGAGAGGGAATCTC
TAGAGAGGGAGAAATCCTTGATATCGGTTCTGAACTTGATATCGTTCAAAAGAGTGGCTCTTGGTATTCTTATAATAATG
AGCGGGTAGGTCAGGGACGCGAGAATGCGAAACAGTTCTTGAAGGAAAATCCGTCTGTTCGCCTTGAAATTCAACAAAAA
ATTCGTGATCACTATGGTCTTGATGGAGATAAGCCTCTAGTCGAATCCGATGAAGATCAGGAAGAATTAGAGCTTTCATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.97

95.376

0.829
  recA Latilactobacillus sakei subsp. sakei 23K

73.538

93.931

0.691
  recA Streptococcus mitis SK321

65.889

99.133

0.653
  recA Streptococcus mitis NCTC 12261

65.598

99.133

0.65
  recA Streptococcus pyogenes NZ131

68.293

94.798

0.647
  recA Streptococcus pneumoniae Rx1

67.066

96.532

0.647
  recA Streptococcus pneumoniae D39

67.066

96.532

0.647
  recA Streptococcus pneumoniae R6

67.066

96.532

0.647
  recA Streptococcus pneumoniae TIGR4

67.066

96.532

0.647
  recA Streptococcus mutans UA159

68.085

95.087

0.647
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.376

0.636
  recA Ralstonia pseudosolanacearum GMI1000

68.371

90.462

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

98.266

0.613
  recA Neisseria gonorrhoeae MS11

64.526

94.509

0.61
  recA Neisseria gonorrhoeae MS11

64.526

94.509

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.526

94.509

0.61
  recA Acinetobacter baumannii D1279779

61.516

99.133

0.61
  recA Helicobacter pylori 26695

61.337

99.422

0.61
  recA Helicobacter pylori strain NCTC11637

61.047

99.422

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.775

0.607
  recA Vibrio cholerae strain A1552

65.421

92.775

0.607
  recA Acinetobacter baylyi ADP1

61.224

99.133

0.607
  recA Glaesserella parasuis strain SC1401

63.75

92.486

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.509

0.584
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

93.353

0.566