Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG336_RS05390 Genome accession   NZ_CP085225
Coordinates   1102528..1103766 (+) Length   412 a.a.
NCBI ID   WP_404331541.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1097528..1108766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS05365 (LG336_05360) ymfI 1098305..1099027 (+) 723 WP_404331535.1 elongation factor P 5-aminopentanone reductase -
  LG336_RS05370 (LG336_05365) - 1099106..1099357 (+) 252 WP_404331536.1 DUF3243 domain-containing protein -
  LG336_RS05375 (LG336_05370) - 1100045..1100836 (+) 792 WP_404331537.1 DUF3388 domain-containing protein -
  LG336_RS05380 (LG336_05375) - 1100857..1101762 (+) 906 WP_404331539.1 helix-turn-helix domain-containing protein -
  LG336_RS05385 (LG336_05380) pgsA 1101872..1102450 (+) 579 WP_404331540.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG336_RS05390 (LG336_05385) cinA 1102528..1103766 (+) 1239 WP_404331541.1 competence/damage-inducible protein A Machinery gene
  LG336_RS05395 (LG336_05390) recA 1104119..1105159 (+) 1041 WP_404331542.1 recombinase RecA Machinery gene
  LG336_RS05400 (LG336_05395) rny 1105432..1106997 (+) 1566 WP_404331543.1 ribonuclease Y -
  LG336_RS05405 (LG336_05400) - 1107115..1107912 (+) 798 WP_404331544.1 TIGR00282 family metallophosphoesterase -
  LG336_RS05410 (LG336_05405) spoVS 1108277..1108537 (+) 261 WP_090742139.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44339.00 Da        Isoelectric Point: 6.1272

>NTDB_id=616046 LG336_RS05390 WP_404331541.1 1102528..1103766(+) (cinA) [Mesobacillus maritimus strain ADH-29]
MNAEIIAVGSELLLGQINNTNARFLSAQLASVGVNVYFHTVVGDNPVRLEKVLEVAKGRSDIIILTGGLGPTKDDLTKET
IARQLGVELAIDEVAMKSIEGYFNKTNRTMTENNRKQALVLKGAEVLQNDHGMAPGMLFTKENHHYMLLPGPPSEMEPMF
TKYGIPAITAKMGEQAKIVSRVLRFFGIGEAALETKLEDLIESQSNPTIAPLASESEVTIRLTASHASEKTAAKLIDELE
EKILARVGEYFYGYDETSLINEVFKLLKTKGLTIAAAESLTGGLFQEQLTSLSGASSVFKGGIVCYTNEAKVEIVKVRKE
TISQDGAVSAACAKELAENVSKLLGADAGISFTGVAGPDELEGHPAGTVFVAIHVKGKATITEKLQLAGTREINRVRAVK
HGCRLLINSLKE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=616046 LG336_RS05390 WP_404331541.1 1102528..1103766(+) (cinA) [Mesobacillus maritimus strain ADH-29]
ATGAATGCTGAAATCATTGCAGTCGGCTCAGAGCTACTGCTCGGACAAATTAACAACACAAACGCTAGATTTCTATCCGC
ACAGTTAGCTAGTGTTGGTGTGAATGTTTATTTTCATACTGTAGTAGGTGACAACCCTGTCAGACTTGAAAAAGTGTTAG
AGGTGGCCAAGGGACGCTCTGATATAATTATACTAACCGGGGGTCTCGGACCAACAAAGGATGACCTCACGAAGGAAACG
ATTGCTCGACAGTTAGGTGTAGAGCTTGCGATAGATGAAGTGGCAATGAAATCAATCGAAGGCTACTTTAATAAAACAAA
TCGAACGATGACCGAGAACAATCGGAAACAAGCTCTTGTTCTTAAGGGAGCAGAAGTGTTGCAAAATGACCATGGCATGG
CACCGGGAATGCTCTTTACCAAGGAGAATCACCATTATATGCTATTGCCGGGTCCGCCAAGTGAAATGGAACCGATGTTC
ACGAAATATGGTATTCCAGCGATAACAGCAAAGATGGGAGAACAAGCAAAGATAGTTTCAAGAGTCTTGCGTTTCTTTGG
GATAGGAGAAGCGGCACTAGAAACAAAGCTAGAGGATCTCATTGAGAGCCAGAGCAATCCTACCATTGCTCCGCTCGCCT
CAGAATCAGAAGTAACCATTCGGCTTACAGCGAGTCACGCTTCTGAAAAGACAGCGGCAAAGCTTATTGATGAGCTAGAA
GAAAAAATATTGGCCCGTGTTGGGGAGTATTTTTATGGGTATGATGAAACTTCATTAATAAATGAAGTCTTTAAGCTTTT
AAAAACGAAAGGTTTGACCATAGCGGCTGCTGAGAGCCTAACAGGTGGGCTATTCCAAGAACAGCTTACGAGTTTGTCAG
GCGCAAGCAGTGTATTTAAAGGGGGCATCGTTTGTTATACAAATGAGGCCAAAGTCGAGATTGTGAAGGTCCGTAAAGAA
ACGATTTCCCAAGATGGCGCAGTTAGTGCTGCTTGTGCGAAGGAACTAGCAGAGAATGTTTCTAAACTTTTGGGAGCAGA
TGCGGGGATTAGCTTTACAGGCGTTGCAGGTCCAGATGAGCTTGAAGGCCATCCTGCTGGGACTGTTTTTGTAGCTATTC
ACGTAAAAGGAAAAGCAACGATTACTGAAAAACTACAGCTAGCTGGCACTAGGGAGATAAACCGAGTGAGGGCGGTCAAG
CATGGTTGCCGACTGCTGATTAATAGTTTAAAAGAGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60

99.515

0.597
  cinA Streptococcus mutans UA159

48.434

100

0.488
  cinA Streptococcus mitis SK321

46.429

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.19

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.471
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.466
  cinA Streptococcus pneumoniae R6

45.714

100

0.466
  cinA Streptococcus pneumoniae D39

45.476

100

0.464
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374