Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG289_RS10475 Genome accession   NZ_CP085014
Coordinates   2004586..2005653 (-) Length   355 a.a.
NCBI ID   WP_101190496.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1999586..2010653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS10460 (LG289_10465) - 2001274..2001702 (-) 429 WP_058380497.1 RicAFT regulatory complex protein RicA family protein -
  LG289_RS10465 (LG289_10470) - 2001932..2002729 (-) 798 WP_404333825.1 TIGR00282 family metallophosphoesterase -
  LG289_RS10470 (LG289_10475) rny 2002798..2004357 (-) 1560 WP_058380495.1 ribonuclease Y -
  LG289_RS10475 (LG289_10480) recA 2004586..2005653 (-) 1068 WP_101190496.1 recombinase RecA Machinery gene
  LG289_RS10480 (LG289_10485) cinA 2005829..2007082 (-) 1254 WP_404333828.1 competence/damage-inducible protein A Machinery gene
  LG289_RS10485 (LG289_10490) pgsA 2007107..2007685 (-) 579 WP_101190498.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG289_RS10490 (LG289_10495) - 2007735..2008598 (-) 864 WP_101805101.1 helix-turn-helix domain-containing protein -
  LG289_RS10495 (LG289_10500) - 2008616..2009416 (-) 801 WP_058380490.1 YmfK family protein -
  LG289_RS10500 (LG289_10505) ymfI 2009507..2010226 (-) 720 WP_404333831.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38200.29 Da        Isoelectric Point: 5.1959

>NTDB_id=614536 LG289_RS10475 WP_101190496.1 2004586..2005653(-) (recA) [Planococcus rifietoensis strain SLM-623]
MSDRKAALDMALKQIEKQFGKGSVMKLGESTGHNVSTVSSGSLSLDIALGIGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQASGGTAAFIDAEHALDPVYAKALGVDLDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEALKSGNDIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGQGISREGEIVDLAADLDIVQKSGSWYSYNNERVGQGRENAKQFMREHEDIRNEIAGK
VREHYGMTAASYSVAVPKADKKEAEDFNLLVDEEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=614536 LG289_RS10475 WP_101190496.1 2004586..2005653(-) (recA) [Planococcus rifietoensis strain SLM-623]
TTGAGCGATCGTAAAGCAGCGCTGGATATGGCGCTAAAACAAATAGAAAAGCAATTTGGTAAAGGGTCTGTCATGAAATT
GGGTGAAAGCACAGGCCATAATGTCTCAACAGTTTCAAGTGGTTCGTTGTCTCTTGACATCGCACTAGGCATAGGCGGAT
ATCCGCGTGGGCGCGTTATCGAGATCTACGGGCCGGAAAGTTCAGGTAAGACAACGGTTTCTCTCCACGCGATTGCAGAA
GTCCAGGCTTCAGGCGGGACAGCTGCATTTATCGATGCGGAGCACGCCCTTGACCCGGTGTATGCCAAAGCGCTTGGCGT
CGACTTGGATGAACTATTGCTGTCTCAGCCGGATACAGGCGAGCAGGCACTTGAAATCGCAGAAGCGCTCGTGCGCAGCG
GCGCGGTAGACATCGTCGTCATCGACTCCGTGGCAGCACTTGTGCCGAAAGCGGAAATCGAAGGCGAAATGGGCGACTCA
CACGTCGGCCTACAAGCCCGTCTCATGTCACAGGCTCTCCGTAAACTGTCGGGTGCTATCAACAAATCGAACACCATTGC
TGTATTTATCAACCAAATCCGAGAAAAAGTCGGCGTTATGTTCGGTAACCCAGAAGTCACGCCGGGCGGACGCGCATTGA
AATTCTATTCATCCGTACGCCTAGAAGTACGCCGTGCAGAAGCCTTGAAATCCGGCAATGACATCATTGGTAACCGGACG
AAGATCAAAGTCGTCAAAAACAAAGTAGCTCCGCCGTTCCGTACCGCGGAAGTGGACATCATGTATGGACAGGGGATCTC
GCGTGAAGGTGAGATTGTCGACCTAGCGGCTGATTTGGATATCGTCCAAAAGAGCGGCTCATGGTATTCCTACAACAACG
AACGTGTCGGGCAAGGCCGTGAAAACGCTAAGCAATTCATGCGTGAGCATGAAGACATCCGCAACGAAATCGCAGGAAAA
GTCCGTGAACATTACGGCATGACAGCTGCTTCTTATTCAGTCGCTGTTCCGAAAGCTGACAAGAAAGAAGCCGAAGACTT
CAACTTGCTTGTCGACGAAGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

92.113

0.775
  recA Latilactobacillus sakei subsp. sakei 23K

72.805

99.437

0.724
  recA Streptococcus pyogenes NZ131

65.254

99.718

0.651
  recA Streptococcus mutans UA159

64.426

100

0.648
  recA Streptococcus pneumoniae D39

66.97

92.958

0.623
  recA Streptococcus pneumoniae Rx1

66.97

92.958

0.623
  recA Streptococcus pneumoniae R6

66.97

92.958

0.623
  recA Streptococcus pneumoniae TIGR4

66.97

92.958

0.623
  recA Lactococcus lactis subsp. cremoris KW2

66.667

92.958

0.62
  recA Streptococcus mitis NCTC 12261

66.364

92.958

0.617
  recA Streptococcus mitis SK321

66.061

92.958

0.614
  recA Acinetobacter baylyi ADP1

63.393

94.648

0.6
  recA Ralstonia pseudosolanacearum GMI1000

67.516

88.451

0.597
  recA Glaesserella parasuis strain SC1401

61.516

96.62

0.594
  recA Neisseria gonorrhoeae MS11

63.526

92.676

0.589
  recA Neisseria gonorrhoeae MS11

63.526

92.676

0.589
  recA Neisseria gonorrhoeae strain FA1090

63.526

92.676

0.589
  recA Acinetobacter baumannii D1279779

62.575

94.085

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

90.423

0.577
  recA Vibrio cholerae strain A1552

63.863

90.423

0.577
  recA Pseudomonas stutzeri DSM 10701

60.355

95.211

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

92.394

0.575
  recA Helicobacter pylori strain NCTC11637

62.769

91.549

0.575
  recA Helicobacter pylori 26695

62.462

91.549

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.043

91.831

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

90.141

0.561