Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG289_RS10480 Genome accession   NZ_CP085014
Coordinates   2005829..2007082 (-) Length   417 a.a.
NCBI ID   WP_404333828.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2000829..2012082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS10460 (LG289_10465) - 2001274..2001702 (-) 429 WP_058380497.1 RicAFT regulatory complex protein RicA family protein -
  LG289_RS10465 (LG289_10470) - 2001932..2002729 (-) 798 WP_404333825.1 TIGR00282 family metallophosphoesterase -
  LG289_RS10470 (LG289_10475) rny 2002798..2004357 (-) 1560 WP_058380495.1 ribonuclease Y -
  LG289_RS10475 (LG289_10480) recA 2004586..2005653 (-) 1068 WP_101190496.1 recombinase RecA Machinery gene
  LG289_RS10480 (LG289_10485) cinA 2005829..2007082 (-) 1254 WP_404333828.1 competence/damage-inducible protein A Machinery gene
  LG289_RS10485 (LG289_10490) pgsA 2007107..2007685 (-) 579 WP_101190498.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG289_RS10490 (LG289_10495) - 2007735..2008598 (-) 864 WP_101805101.1 helix-turn-helix domain-containing protein -
  LG289_RS10495 (LG289_10500) - 2008616..2009416 (-) 801 WP_058380490.1 YmfK family protein -
  LG289_RS10500 (LG289_10505) ymfI 2009507..2010226 (-) 720 WP_404333831.1 elongation factor P 5-aminopentanone reductase -
  LG289_RS10505 (LG289_10510) yfmH 2010223..2011524 (-) 1302 WP_404333833.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45276.28 Da        Isoelectric Point: 4.6088

>NTDB_id=614537 LG289_RS10480 WP_404333828.1 2005829..2007082(-) (cinA) [Planococcus rifietoensis strain SLM-623]
MNAEIIAVGSELLLGQITNTNARFISGHLAEIGINVYYHTVVGDNPERLKETIAVAESRADLIIFSGGLGPTKDDLTKQT
IAHHLGTTLSMDDSAMESIAAFFERAGRPMTDNNKKQALVLAGSEVLVNENGMAPGMMYQNGNHMYMLLPGPPHELEPMF
QFEAKPKLVHMLNEENVILSHVLRFYGIGEAELEDRLQDILDKQTNPTIAPLASAGEVTLRITAKTDTTDEAWKLIDGAK
EEILERVGDYLYGYDDDSLASKAIDLLKQQGKTVSAAESLTAGLFQSELASVAGASAVLNGGVVTYNEQMKIQQLGMTQE
FFKEHSVVSEETAAAMASAVREKFNTDISVSLTGAAGPDAHGEEPAGTVWIGIASDEGTKAYRLQLSGMRNTNRIRAVKL
ALYYLIRTLADEDARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=614537 LG289_RS10480 WP_404333828.1 2005829..2007082(-) (cinA) [Planococcus rifietoensis strain SLM-623]
ATGAACGCTGAAATTATCGCAGTTGGCTCGGAGCTCCTGCTCGGCCAAATCACCAATACGAACGCCCGCTTCATTTCGGG
GCATCTCGCTGAAATCGGGATCAATGTCTATTACCATACAGTAGTAGGCGACAATCCAGAGCGCTTGAAAGAAACGATCG
CTGTCGCAGAATCGCGTGCAGACCTGATCATCTTCTCCGGAGGGCTCGGGCCGACAAAAGACGATTTGACAAAACAGACT
ATCGCCCACCATCTGGGCACGACGCTTTCGATGGACGATTCGGCGATGGAATCGATTGCCGCGTTTTTCGAACGCGCCGG
CCGCCCGATGACCGACAACAATAAAAAGCAGGCGCTAGTGCTTGCGGGCAGTGAAGTGCTGGTCAATGAAAACGGCATGG
CACCGGGAATGATGTATCAAAATGGCAATCATATGTATATGCTGCTGCCTGGACCGCCGCATGAATTGGAGCCGATGTTC
CAGTTCGAGGCGAAACCGAAATTGGTGCACATGCTCAATGAGGAAAACGTCATCCTTTCACATGTGCTGCGTTTTTACGG
CATCGGGGAAGCAGAACTTGAAGACCGCCTGCAGGATATTTTGGATAAGCAGACCAACCCGACGATTGCTCCGCTGGCAT
CCGCCGGTGAAGTCACACTGCGCATCACGGCAAAAACGGACACCACGGATGAGGCGTGGAAATTGATCGATGGCGCAAAA
GAAGAAATCCTGGAGCGCGTCGGCGATTATCTGTATGGCTATGATGATGATTCTCTTGCCTCGAAAGCCATCGATTTGTT
GAAACAGCAAGGCAAAACGGTTTCGGCGGCAGAAAGCTTGACGGCTGGCCTGTTTCAGTCCGAGCTTGCTTCTGTCGCAG
GGGCGAGTGCTGTCTTGAATGGCGGCGTTGTCACCTATAACGAACAAATGAAAATCCAGCAGCTCGGCATGACACAAGAA
TTTTTCAAAGAGCATTCCGTCGTCAGCGAAGAAACGGCTGCAGCGATGGCTTCGGCTGTCCGAGAGAAATTCAATACCGA
TATCAGCGTCAGTTTGACCGGCGCGGCTGGGCCGGATGCACATGGCGAGGAACCGGCCGGAACGGTATGGATCGGCATCG
CGAGCGATGAAGGGACGAAAGCCTATCGCCTTCAGCTGTCAGGAATGAGGAACACAAACCGCATCCGTGCCGTGAAACTG
GCCTTGTACTATTTGATACGAACACTGGCAGATGAAGACGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.056

98.082

0.52
  cinA Streptococcus mutans UA159

45.411

99.281

0.451
  cinA Streptococcus mitis SK321

45.192

99.76

0.451
  cinA Streptococcus mitis NCTC 12261

44.712

99.76

0.446
  cinA Streptococcus pneumoniae Rx1

44.498

100

0.446
  cinA Streptococcus pneumoniae R6

44.498

100

0.446
  cinA Streptococcus pneumoniae TIGR4

44.471

99.76

0.444
  cinA Streptococcus pneumoniae D39

44.258

100

0.444
  cinA Streptococcus suis isolate S10

39.286

94.005

0.369