Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG296_RS06630 Genome accession   NZ_CP085009
Coordinates   1356107..1357174 (+) Length   355 a.a.
NCBI ID   WP_285842036.1    Uniprot ID   -
Organism   Ureibacillus chungkukjangi strain SLM-173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351107..1362174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG296_RS06605 (LG296_06610) - 1351333..1351590 (+) 258 WP_404427691.1 DUF3243 domain-containing protein -
  LG296_RS06610 (LG296_06615) - 1351995..1352795 (+) 801 WP_404427692.1 DUF3388 domain-containing protein -
  LG296_RS06615 (LG296_06620) - 1352937..1353821 (+) 885 WP_404427693.1 helix-turn-helix domain-containing protein -
  LG296_RS06620 (LG296_06625) pgsA 1353959..1354537 (+) 579 WP_404427694.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG296_RS06625 (LG296_06630) cinA 1354550..1355806 (+) 1257 WP_404427695.1 competence/damage-inducible protein A Machinery gene
  LG296_RS06630 (LG296_06635) recA 1356107..1357174 (+) 1068 WP_285842036.1 recombinase RecA Machinery gene
  LG296_RS06635 (LG296_06640) rny 1358092..1359651 (+) 1560 WP_404427696.1 ribonuclease Y -
  LG296_RS06640 (LG296_06645) - 1359796..1360317 (+) 522 WP_404427697.1 hypothetical protein -
  LG296_RS06645 (LG296_06650) - 1360656..1361990 (-) 1335 WP_404427698.1 MFS transporter -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38447.62 Da        Isoelectric Point: 4.7354

>NTDB_id=614459 LG296_RS06630 WP_285842036.1 1356107..1357174(+) (recA) [Ureibacillus chungkukjangi strain SLM-173]
MSNDRKAALDMALKQIEKQFGKGSIMKLGEQSDRQMETSSSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EIQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGD
SHMGLQARLMSQALRKLSGIINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYASIRLEVRRAETIKQGTEMIGNK
TKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYAYDGERIGQGRENAKAFLKANPDIREKVSN
QIRESYGMTANSYTIGAHDEEEEMDKELASLLDEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=614459 LG296_RS06630 WP_285842036.1 1356107..1357174(+) (recA) [Ureibacillus chungkukjangi strain SLM-173]
TTGAGTAATGATCGTAAAGCTGCCTTAGATATGGCGTTAAAGCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGAA
ACTTGGTGAGCAATCTGATCGCCAAATGGAGACTTCTTCAAGTGGTTCATTAGCACTTGATGCAGCATTAGGTGTCGGCG
GTTACCCAAGAGGTCGTATCGTAGAAATCTACGGTCCAGAATCATCAGGTAAAACAACTGTAGCTCTACATGCCATCGCT
GAAATCCAAGCAAACGGCGGACAAGCTGCATTTATCGATGCGGAGCACGCATTAGACCCTGTTTACGCACAAAAATTAGG
CGTTAACATCGACGAGCTATTACTTTCTCAGCCAGACACTGGTGAGCAAGCATTAGAAATCGCTGAAGCATTAGTACGTA
GTGGTGCAATCGATATCATCGTCATTGACTCAGTTGCAGCCCTAGTACCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCACATGGGTCTACAAGCTCGTTTAATGTCTCAAGCATTACGTAAATTATCAGGTATCATCAACAAATCTAACACACT
AGCAATCTTCATCAACCAAGTACGTGAAAAAATCGGTGTTATGTTCGGTAACCCTGAAACAACTACTGGTGGACGTGCCC
TTAAATTCTACGCGTCAATTCGTCTAGAAGTACGCCGTGCTGAAACTATCAAGCAAGGCACTGAAATGATTGGTAACAAA
ACAAAAATTAAAGTCGTGAAAAACAAGGTAGCGCCACCATTCCGTACAGCTGAAGTAGACATCATGTACGGGGAGGGGAT
TTCTAAAGAAGGTGAAATCGTCGACATCGGTGCAGAGCTAGACATCATCCAAAAAAGTGGCTCATGGTACGCATATGACG
GCGAACGCATTGGACAAGGTAGAGAAAATGCAAAAGCCTTCCTTAAAGCAAACCCAGACATCCGCGAAAAAGTATCAAAC
CAAATCCGTGAATCTTACGGCATGACAGCTAACTCATACACAATCGGCGCCCATGACGAAGAAGAAGAAATGGACAAAGA
ACTAGCTTCATTACTAGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.371

92.676

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

74.006

92.113

0.682
  recA Streptococcus mutans UA159

63.361

100

0.648
  recA Streptococcus pyogenes NZ131

63.585

100

0.639
  recA Neisseria gonorrhoeae MS11

65.598

96.62

0.634
  recA Neisseria gonorrhoeae strain FA1090

65.598

96.62

0.634
  recA Neisseria gonorrhoeae MS11

65.598

96.62

0.634
  recA Streptococcus mitis NCTC 12261

67.173

92.676

0.623
  recA Streptococcus mitis SK321

66.869

92.676

0.62
  recA Streptococcus pneumoniae Rx1

66.869

92.676

0.62
  recA Streptococcus pneumoniae D39

66.869

92.676

0.62
  recA Streptococcus pneumoniae R6

66.869

92.676

0.62
  recA Streptococcus pneumoniae TIGR4

66.869

92.676

0.62
  recA Glaesserella parasuis strain SC1401

63.953

96.901

0.62
  recA Lactococcus lactis subsp. cremoris KW2

65.465

93.803

0.614
  recA Acinetobacter baylyi ADP1

63.265

96.62

0.611
  recA Ralstonia pseudosolanacearum GMI1000

65.854

92.394

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.628

96.901

0.597
  recA Vibrio cholerae strain A1552

65.432

91.268

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.432

91.268

0.597
  recA Acinetobacter baumannii D1279779

61.696

96.338

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.676

0.592
  recA Helicobacter pylori 26695

60.231

97.746

0.589
  recA Helicobacter pylori strain NCTC11637

60.231

97.746

0.589
  recA Pseudomonas stutzeri DSM 10701

62.727

92.958

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

90.704

0.563