Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG296_RS06625 Genome accession   NZ_CP085009
Coordinates   1354550..1355806 (+) Length   418 a.a.
NCBI ID   WP_404427695.1    Uniprot ID   -
Organism   Ureibacillus chungkukjangi strain SLM-173     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1349550..1360806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG296_RS06600 (LG296_06605) ymfI 1350557..1351285 (+) 729 WP_404427690.1 elongation factor P 5-aminopentanone reductase -
  LG296_RS06605 (LG296_06610) - 1351333..1351590 (+) 258 WP_404427691.1 DUF3243 domain-containing protein -
  LG296_RS06610 (LG296_06615) - 1351995..1352795 (+) 801 WP_404427692.1 DUF3388 domain-containing protein -
  LG296_RS06615 (LG296_06620) - 1352937..1353821 (+) 885 WP_404427693.1 helix-turn-helix domain-containing protein -
  LG296_RS06620 (LG296_06625) pgsA 1353959..1354537 (+) 579 WP_404427694.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG296_RS06625 (LG296_06630) cinA 1354550..1355806 (+) 1257 WP_404427695.1 competence/damage-inducible protein A Machinery gene
  LG296_RS06630 (LG296_06635) recA 1356107..1357174 (+) 1068 WP_285842036.1 recombinase RecA Machinery gene
  LG296_RS06635 (LG296_06640) rny 1358092..1359651 (+) 1560 WP_404427696.1 ribonuclease Y -
  LG296_RS06640 (LG296_06645) - 1359796..1360317 (+) 522 WP_404427697.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44865.46 Da        Isoelectric Point: 4.9220

>NTDB_id=614458 LG296_RS06625 WP_404427695.1 1354550..1355806(+) (cinA) [Ureibacillus chungkukjangi strain SLM-173]
MNAEIIAVGSELLLGQIANTNAKFISTQLSELGINVFYHTVVGDNADRLKSAIEIAESRADLIIFSGGLGPTKDDLTKET
IAKHLGLPLVMDDVALKFIEEFFAARGRGMTENNRKQALILEGSTVLANHHGMAPGMLLEKSGNTYILLPGPPKELEPMF
QFEAKSKLAALLNDGGVIQSHVLRFYGIGEAELEVRVQDILDSQTNPTVAPLASDGEVTLRITAKAENVEEAWKLIKAKE
EEILAIVGEYHYGYNDDSLASKLVEVLIHNKLTISAAESLTAGLFQSELAEIPGVGGTLIGGVVTYTPEAKVNQLGIEKS
LIEQCGVVSGECAGAMAAQVRKRFGTDIGVGLTGAAGPDAHDGQPPGTIWLGFSIGDAEPVTHKLSLQGMRNTNRIRTVK
FACSYLMRLLIEKGYEKI

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=614458 LG296_RS06625 WP_404427695.1 1354550..1355806(+) (cinA) [Ureibacillus chungkukjangi strain SLM-173]
ATGAATGCAGAAATCATTGCGGTTGGCTCGGAGCTGTTGTTAGGACAAATTGCCAATACAAATGCAAAATTCATCTCCAC
GCAATTATCTGAGCTAGGCATTAATGTTTTTTACCATACAGTTGTAGGGGATAATGCAGACCGCCTGAAAAGTGCGATTG
AGATTGCTGAATCCCGTGCAGATTTAATCATCTTCTCTGGTGGACTTGGACCGACAAAGGATGATTTAACGAAGGAAACA
ATTGCCAAGCATCTTGGATTGCCTTTGGTGATGGATGATGTGGCACTGAAGTTCATCGAGGAATTTTTCGCTGCACGCGG
GCGCGGTATGACCGAAAACAATCGCAAGCAGGCGTTGATTTTAGAGGGTAGTACTGTGCTGGCAAATCATCATGGGATGG
CACCAGGAATGCTTTTAGAGAAAAGCGGGAACACATACATATTACTTCCAGGACCGCCAAAGGAACTGGAGCCAATGTTC
CAATTTGAAGCAAAGTCAAAGCTTGCTGCCCTTTTAAATGATGGTGGCGTTATTCAATCTCATGTCCTGCGTTTTTACGG
CATCGGGGAGGCAGAGCTCGAGGTTCGGGTTCAAGACATTCTAGATAGCCAAACTAATCCAACTGTTGCACCGCTTGCAA
GTGATGGCGAGGTTACATTACGTATCACGGCAAAGGCTGAAAATGTTGAGGAAGCCTGGAAGCTCATTAAAGCAAAGGAA
GAAGAGATTCTTGCTATCGTGGGCGAGTACCACTACGGCTATAATGATGATTCTTTAGCATCCAAATTAGTGGAAGTGCT
GATTCATAACAAGCTAACCATTTCTGCAGCAGAAAGCCTGACAGCTGGCTTGTTCCAATCTGAGCTTGCTGAAATTCCAG
GAGTGGGAGGTACCTTAATCGGTGGAGTTGTAACCTATACACCAGAGGCGAAGGTAAATCAGCTAGGAATTGAAAAATCT
CTGATCGAGCAATGCGGCGTTGTAAGTGGAGAATGTGCAGGTGCGATGGCAGCTCAGGTTCGCAAAAGGTTTGGCACAGA
TATTGGGGTAGGCTTGACTGGCGCTGCTGGACCAGATGCACATGATGGTCAACCACCAGGAACTATCTGGTTAGGCTTTA
GCATTGGCGACGCTGAACCGGTAACGCATAAGCTTTCACTTCAAGGCATGCGCAACACGAATCGTATCCGAACGGTAAAA
TTTGCATGTAGCTATTTAATGCGCTTGCTTATTGAGAAAGGCTACGAAAAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.474

98.325

0.545
  cinA Streptococcus mitis SK321

47.781

91.627

0.438
  cinA Streptococcus pneumoniae TIGR4

47.258

91.627

0.433
  cinA Streptococcus pneumoniae Rx1

47.258

91.627

0.433
  cinA Streptococcus pneumoniae R6

47.258

91.627

0.433
  cinA Streptococcus pneumoniae D39

46.997

91.627

0.431
  cinA Streptococcus mitis NCTC 12261

46.997

91.627

0.431
  cinA Streptococcus mutans UA159

46.825

90.431

0.423
  cinA Streptococcus suis isolate S10

41.6

89.713

0.373