Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG291_RS09765 Genome accession   NZ_CP084990
Coordinates   1898522..1899562 (+) Length   346 a.a.
NCBI ID   WP_035330723.1    Uniprot ID   W7KWA9
Organism   Cytobacillus firmus strain WLG-456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1893522..1904562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS09740 (LG291_09685) - 1893671..1893928 (+) 258 WP_135149119.1 DUF3243 domain-containing protein -
  LG291_RS09745 (LG291_09690) - 1894164..1894955 (+) 792 WP_035330727.1 YmfK family protein -
  LG291_RS09750 (LG291_09695) - 1894977..1895882 (+) 906 WP_404358813.1 helix-turn-helix domain-containing protein -
  LG291_RS09755 (LG291_09700) pgsA 1896395..1896973 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG291_RS09760 (LG291_09705) cinA 1897000..1898250 (+) 1251 WP_404358815.1 competence/damage-inducible protein A Machinery gene
  LG291_RS09765 (LG291_09710) recA 1898522..1899562 (+) 1041 WP_035330723.1 recombinase RecA Machinery gene
  LG291_RS09770 (LG291_09715) rny 1899932..1901494 (+) 1563 WP_048008961.1 ribonuclease Y -
  LG291_RS09775 (LG291_09720) - 1901624..1902421 (+) 798 WP_197207317.1 TIGR00282 family metallophosphoesterase -
  LG291_RS09780 (LG291_09725) spoVS 1902753..1903013 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -
  LG291_RS09785 (LG291_09730) - 1903144..1904094 (+) 951 WP_394583693.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37703.96 Da        Isoelectric Point: 4.8613

>NTDB_id=614213 LG291_RS09765 WP_035330723.1 1898522..1899562(+) (recA) [Cytobacillus firmus strain WLG-456]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSSIRLEVRRAETLKQGNEMVGNKT
KIKIVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSFNEERLGQGRENAKVFLKENPEIRLTIQKQ
IREHYGLDEEKVASGDEEQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=614213 LG291_RS09765 WP_035330723.1 1898522..1899562(+) (recA) [Cytobacillus firmus strain WLG-456]
GTGAGTGATCGTCAAGCAGCTCTTGAAATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTATCATGAAGCT
CGGGGAACAGACTGACCGCAGAATTTCCACTGTACCAAGCGGATCTCTTGCTCTTGATGCAGCTCTTGGGGTAGGCGGCT
ATCCAAGAGGACGTATTATTGAAGTCTATGGACCGGAGAGCTCAGGTAAAACAACAGTAGCCCTGCATGCTATTGCAGAA
GTTCAGGCAAGCGGCGGACAAGCAGCGTTTATCGATGCCGAACACGCCTTAGACCCTGTTTATGCACAAAAACTTGGTGT
GAATATTGACGAACTTCTTCTTTCTCAGCCAGATACCGGGGAGCAGGCGCTTGAAATTGCAGAAGCCCTTGTTCGAAGCG
GTGCTATTGATATTCTCGTAGTTGACTCTGTGGCAGCCCTTGTTCCCAAGGCTGAAATTGAAGGAGAAATGGGTGACTCC
CATGTGGGTCTGCAGGCCCGCCTTATGTCACAGGCACTTCGTAAGCTATCAGGCGCAATCAACAAATCAAAGACAATCGC
GATTTTCATTAACCAAATCCGTGAAAAAATCGGAATTATGTTTGGAAACCCTGAGACGACTCCAGGGGGACGCGCATTGA
AGTTCTACTCTTCCATCCGCCTTGAAGTGCGCCGTGCAGAAACTCTTAAACAAGGCAATGAAATGGTTGGTAATAAGACA
AAGATTAAAATTGTCAAAAATAAAGTCGCTCCTCCATTCCGAGTGGCGGAAGTTGACATCATGTACGGTGAAGGAATCTC
TAAGGAAGGTGAAATCATCGATCTTGGCTCTGAGCTGGATATTGTCCAGAAGAGCGGTTCATGGTACTCATTTAACGAGG
AGCGCTTAGGCCAAGGCCGCGAAAACGCCAAGGTATTCCTAAAAGAAAACCCTGAAATCCGCCTGACTATTCAAAAACAA
ATCCGCGAACATTATGGACTTGATGAAGAAAAAGTTGCCAGCGGAGACGAAGAGCAGGAAGAATTCGAGCTGATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7KWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.361

95.954

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

71.765

98.266

0.705
  recA Streptococcus pneumoniae D39

66.282

100

0.665
  recA Streptococcus pneumoniae R6

66.282

100

0.665
  recA Streptococcus pneumoniae Rx1

66.282

100

0.665
  recA Streptococcus pneumoniae TIGR4

66.282

100

0.665
  recA Streptococcus mutans UA159

65.517

100

0.659
  recA Streptococcus mitis NCTC 12261

67.062

97.399

0.653
  recA Streptococcus mitis SK321

67.273

95.376

0.642
  recA Streptococcus pyogenes NZ131

66.159

94.798

0.627
  recA Neisseria gonorrhoeae MS11

63.45

98.844

0.627
  recA Neisseria gonorrhoeae MS11

63.45

98.844

0.627
  recA Neisseria gonorrhoeae strain FA1090

63.45

98.844

0.627
  recA Lactococcus lactis subsp. cremoris KW2

64.095

97.399

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Ralstonia pseudosolanacearum GMI1000

64.832

94.509

0.613
  recA Helicobacter pylori strain NCTC11637

61.988

98.844

0.613
  recA Helicobacter pylori 26695

61.988

98.844

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.775

0.604
  recA Vibrio cholerae strain A1552

65.109

92.775

0.604
  recA Acinetobacter baumannii D1279779

60.35

99.133

0.598
  recA Acinetobacter baylyi ADP1

60

99.711

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Glaesserella parasuis strain SC1401

63.323

92.197

0.584
  recA Pseudomonas stutzeri DSM 10701

62.813

92.486

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566