Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG291_RS09760 Genome accession   NZ_CP084990
Coordinates   1897000..1898250 (+) Length   416 a.a.
NCBI ID   WP_404358815.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1892000..1903250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS09735 (LG291_09680) ymfI 1892833..1893555 (+) 723 WP_197207321.1 elongation factor P 5-aminopentanone reductase -
  LG291_RS09740 (LG291_09685) - 1893671..1893928 (+) 258 WP_135149119.1 DUF3243 domain-containing protein -
  LG291_RS09745 (LG291_09690) - 1894164..1894955 (+) 792 WP_035330727.1 YmfK family protein -
  LG291_RS09750 (LG291_09695) - 1894977..1895882 (+) 906 WP_404358813.1 helix-turn-helix domain-containing protein -
  LG291_RS09755 (LG291_09700) pgsA 1896395..1896973 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG291_RS09760 (LG291_09705) cinA 1897000..1898250 (+) 1251 WP_404358815.1 competence/damage-inducible protein A Machinery gene
  LG291_RS09765 (LG291_09710) recA 1898522..1899562 (+) 1041 WP_035330723.1 recombinase RecA Machinery gene
  LG291_RS09770 (LG291_09715) rny 1899932..1901494 (+) 1563 WP_048008961.1 ribonuclease Y -
  LG291_RS09775 (LG291_09720) - 1901624..1902421 (+) 798 WP_197207317.1 TIGR00282 family metallophosphoesterase -
  LG291_RS09780 (LG291_09725) spoVS 1902753..1903013 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45313.80 Da        Isoelectric Point: 4.6553

>NTDB_id=614212 LG291_RS09760 WP_404358815.1 1897000..1898250(+) (cinA) [Cytobacillus firmus strain WLG-456]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLKSVIKIAEGRSDLIVFTGGLGPTKDDLTKET
IARHLGKELIMDEQALESIQLYFNRTNREMTENNKKQALVLEDAQVLLNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLINEAE
TKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWINGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=614212 LG291_RS09760 WP_404358815.1 1897000..1898250(+) (cinA) [Cytobacillus firmus strain WLG-456]
ATGAATGCTGAAATTATAGCTGTCGGGTCTGAGCTTTTACTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCTGAGCGGCTGAAATCGGTTATCA
AAATTGCCGAAGGCCGTTCTGATTTGATCGTCTTCACGGGCGGACTGGGACCGACAAAGGATGATTTAACAAAAGAAACG
ATCGCTCGCCATCTTGGCAAAGAGCTCATCATGGACGAACAGGCGCTTGAATCTATACAGCTTTATTTTAATCGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAAGTGCTTCTTAACGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGTCATGTTTTTATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTCAAACATGCCTTTCCAGCCCTGCAATCTAAGCTGGGCACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAAATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCCCCGCTTGCAT
CTGATGGGGAAGTCACTCTGAGGCTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTCCAGGAGGAGTTTACATCCATTCCGG
GAGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGAA
ACGATTGATAACGACGGGGTCGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGAATCAGCTTTACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTATATATAGGCATTT
GGATAAATGGAAGGCCGGTGCAGACCGAAAAGCTGAACCTTGGAGGAACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.314

98.798

0.606
  cinA Streptococcus mitis SK321

45.952

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.459
  cinA Streptococcus mutans UA159

45.346

100

0.457
  cinA Streptococcus pneumoniae Rx1

45

100

0.454
  cinA Streptococcus pneumoniae R6

45

100

0.454
  cinA Streptococcus pneumoniae D39

44.762

100

0.452
  cinA Streptococcus suis isolate S10

38.677

94.471

0.365