Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGQ02_RS12355 Genome accession   NZ_CP084703
Coordinates   2530740..2531792 (-) Length   350 a.a.
NCBI ID   WP_226514674.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2525740..2536792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS12340 (LGQ02_12340) - 2527433..2527693 (-) 261 WP_226514671.1 stage V sporulation protein S -
  LGQ02_RS12345 (LGQ02_12345) - 2527849..2528643 (-) 795 WP_226514672.1 TIGR00282 family metallophosphoesterase -
  LGQ02_RS12350 (LGQ02_12350) rny 2528828..2530384 (-) 1557 WP_404802429.1 ribonuclease Y -
  LGQ02_RS12355 (LGQ02_12355) recA 2530740..2531792 (-) 1053 WP_226514674.1 recombinase RecA Machinery gene
  LGQ02_RS12360 (LGQ02_12360) - 2532185..2533765 (-) 1581 WP_226514675.1 DEAD/DEAH box helicase -
  LGQ02_RS12365 (LGQ02_12365) cinA 2533766..2535022 (-) 1257 WP_226514676.1 competence/damage-inducible protein A Machinery gene
  LGQ02_RS12370 (LGQ02_12370) pgsA 2535234..2535812 (-) 579 WP_226514677.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38033.20 Da        Isoelectric Point: 4.9182

>NTDB_id=612543 LGQ02_RS12355 WP_226514674.1 2530740..2531792(-) (recA) [Bacillus shivajii strain JCM 32183]
MSERKQALDMALRQIEKQFGKGSIMKLGEQTDQRVSTISSGALALDIALGVGGYPRGRIVEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDMIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVNKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGNKT
KIKIVKNKVAPPFRTAEVDIMYGEGISREGSLLDIASDLDIVQKSGAWYSYEGERLGQGRENAKQFLKENSDITSTIEKQ
IREYHELDTPKEVPAEDPAEEDGDIPLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=612543 LGQ02_RS12355 WP_226514674.1 2530740..2531792(-) (recA) [Bacillus shivajii strain JCM 32183]
ATGTCAGAACGTAAACAAGCATTAGACATGGCACTAAGACAAATCGAAAAGCAGTTCGGAAAAGGTTCGATTATGAAACT
AGGAGAACAAACGGATCAACGAGTTTCAACGATTTCTAGCGGTGCTTTAGCATTAGACATTGCATTAGGTGTGGGTGGTT
ATCCAAGAGGAAGAATTGTCGAAGTTTATGGTCCAGAATCTTCTGGTAAAACAACAGTTGCTTTACATGCAATCGCCGAA
GTGCAACGTAATGGTGGACAAGCAGCATTTATCGATGCAGAGCATGCTCTAGATCCAGTCTATGCACAAAAATTAGGTGT
AAATATTGATGAGCTATTATTATCTCAACCTGACACAGGGGAACAAGCATTAGAAATTGCAGAAGCTCTTGTACGTAGTG
GAGCGATCGATATGATCGTTGTCGATTCAGTTGCAGCTCTTGTACCAAAAGCTGAAATTGAAGGGGAAATGGGAGACAGC
CACGTAGGTTTACAAGCGAGACTTATGTCCCAAGCATTAAGAAAGCTCTCTGGAGCTGTCAATAAATCGAAGACGATTGC
TGTGTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACGACACCAGGGGGACGTGCATTGA
AGTTCTATTCTTCTGTTCGTCTTGAGGTTCGTCGCGCAGAAACATTAAAGCAAGGTAATGATATGATCGGTAACAAAACA
AAGATTAAAATCGTGAAAAATAAAGTAGCGCCACCATTTAGAACAGCTGAAGTGGATATTATGTACGGAGAAGGTATTTC
TCGTGAAGGGTCATTATTAGATATTGCATCTGACTTAGACATTGTCCAAAAGAGTGGTGCATGGTATTCGTACGAAGGAG
AGCGTCTTGGCCAAGGAAGAGAAAACGCAAAACAATTCCTAAAAGAAAACTCAGATATTACTAGTACGATTGAAAAACAA
ATTCGTGAGTATCATGAACTTGATACACCTAAAGAAGTTCCGGCGGAAGACCCTGCAGAAGAAGATGGAGATATCCCATT
AGATTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.018

94

0.809
  recA Latilactobacillus sakei subsp. sakei 23K

71.965

98.857

0.711
  recA Streptococcus pneumoniae D39

65.47

100

0.677
  recA Streptococcus pneumoniae R6

65.47

100

0.677
  recA Streptococcus pneumoniae Rx1

65.47

100

0.677
  recA Streptococcus pneumoniae TIGR4

65.47

100

0.677
  recA Streptococcus mutans UA159

70.679

92.571

0.654
  recA Streptococcus mitis NCTC 12261

69.538

92.857

0.646
  recA Streptococcus mitis SK321

69.231

92.857

0.643
  recA Streptococcus pyogenes NZ131

69.444

92.571

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.667

96

0.64
  recA Neisseria gonorrhoeae MS11

64.371

95.429

0.614
  recA Neisseria gonorrhoeae MS11

64.371

95.429

0.614
  recA Neisseria gonorrhoeae strain FA1090

64.371

95.429

0.614
  recA Acinetobacter baumannii D1279779

62.209

98.286

0.611
  recA Vibrio cholerae strain A1552

66.049

92.571

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.049

92.571

0.611
  recA Acinetobacter baylyi ADP1

62.281

97.714

0.609
  recA Pseudomonas stutzeri DSM 10701

60.819

97.714

0.594
  recA Glaesserella parasuis strain SC1401

65

91.429

0.594
  recA Ralstonia pseudosolanacearum GMI1000

62.805

93.714

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.062

91.429

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.429

0.574
  recA Helicobacter pylori strain NCTC11637

61.491

92

0.566
  recA Helicobacter pylori 26695

61.491

92

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.491

92

0.566