Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LGQ02_RS12365 Genome accession   NZ_CP084703
Coordinates   2533766..2535022 (-) Length   418 a.a.
NCBI ID   WP_226514676.1    Uniprot ID   -
Organism   Bacillus shivajii strain JCM 32183     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2528766..2540022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGQ02_RS12350 (LGQ02_12350) rny 2528828..2530384 (-) 1557 WP_404802429.1 ribonuclease Y -
  LGQ02_RS12355 (LGQ02_12355) recA 2530740..2531792 (-) 1053 WP_226514674.1 recombinase RecA Machinery gene
  LGQ02_RS12360 (LGQ02_12360) - 2532185..2533765 (-) 1581 WP_226514675.1 DEAD/DEAH box helicase -
  LGQ02_RS12365 (LGQ02_12365) cinA 2533766..2535022 (-) 1257 WP_226514676.1 competence/damage-inducible protein A Machinery gene
  LGQ02_RS12370 (LGQ02_12370) pgsA 2535234..2535812 (-) 579 WP_226514677.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LGQ02_RS12375 (LGQ02_12375) - 2536033..2536905 (-) 873 WP_226514678.1 RodZ domain-containing protein -
  LGQ02_RS12380 (LGQ02_12380) - 2536922..2537695 (-) 774 WP_226514679.1 DUF3388 domain-containing protein -
  LGQ02_RS12385 (LGQ02_12385) - 2537972..2538220 (-) 249 WP_226514680.1 DUF3243 domain-containing protein -
  LGQ02_RS12390 (LGQ02_12390) ymfI 2538301..2539029 (-) 729 WP_226514681.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46666.82 Da        Isoelectric Point: 4.7777

>NTDB_id=612544 LGQ02_RS12365 WP_226514676.1 2533766..2535022(-) (cinA) [Bacillus shivajii strain JCM 32183]
MNAEIVAVGSELLLGQIDNTNATYLSRQLNNLGVNVYHHTVVGDNEERLYKVLETALNRSDLVITTGGLGPTKDDLTKET
LAQLLSRNLVYDKITEERIIEYFKQRSRTMTENNRKQALVIEGSKIIDNHHGLACGMLMTYENKKVMMLPGPPKELIPMF
ENECIPLLNRQLSNSSFIQSRVLRFFDIGESQLVDIIDDLLETQTNPTIAPLASDGEVTLRLTVKGENEGQNEQKLDDLQ
DKVVERLEPYFYGTGNDTLSKSVSDLLRIMDYSLSSAESLTGGSFSTELTSLDGASNFFKGGFITYTNEQKHELLGISNE
LLNKYGAISHECAEALAKQVRLQTGSNVGLSFTGVAGPKEAEGKQPGLVYVGLSTEDELVSYELRLAGSRSNIRERSVKY
GLYYLLQWLRKEMKKVDE

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=612544 LGQ02_RS12365 WP_226514676.1 2533766..2535022(-) (cinA) [Bacillus shivajii strain JCM 32183]
ATGAATGCAGAAATTGTTGCAGTAGGATCTGAATTACTTTTAGGACAAATTGATAATACAAATGCTACATATTTATCGAG
ACAATTAAATAACTTAGGGGTTAACGTTTATCACCACACAGTAGTGGGTGATAATGAAGAACGGTTATATAAAGTTCTAG
AGACGGCGCTTAACAGGTCAGATCTAGTTATTACAACTGGTGGACTTGGTCCAACGAAAGATGATTTAACGAAAGAGACG
TTAGCTCAGTTGTTAAGTAGAAATCTAGTGTATGATAAAATAACAGAAGAACGAATTATTGAGTACTTTAAACAAAGAAG
TCGCACGATGACTGAAAACAATAGGAAGCAAGCTTTAGTCATTGAAGGCTCTAAAATAATTGATAATCATCATGGTCTTG
CTTGTGGGATGCTGATGACGTATGAAAATAAAAAGGTTATGATGCTTCCTGGTCCACCAAAAGAACTCATTCCAATGTTT
GAAAATGAATGTATTCCATTACTAAACCGACAGTTATCGAACTCAAGCTTTATCCAATCACGGGTTCTACGTTTTTTTGA
TATTGGCGAGTCACAATTAGTAGATATCATTGATGATTTACTTGAAACGCAAACAAATCCGACAATTGCTCCATTAGCAT
CGGATGGTGAAGTGACGTTAAGGTTGACTGTCAAAGGAGAAAATGAAGGACAAAATGAGCAAAAATTAGATGACCTTCAA
GATAAAGTGGTTGAAAGGCTTGAGCCCTATTTTTATGGGACTGGTAATGACACACTTAGTAAATCTGTTAGTGATCTATT
ACGGATTATGGATTACTCACTAAGTTCAGCTGAAAGTTTGACTGGAGGATCATTCTCAACAGAACTGACATCTTTGGATG
GGGCTTCTAACTTTTTTAAAGGTGGGTTTATTACATATACCAATGAACAAAAGCATGAATTACTAGGTATTTCAAATGAG
CTACTAAATAAATATGGAGCGATTAGTCACGAATGTGCTGAAGCATTGGCGAAACAAGTCCGTTTACAAACGGGCAGTAA
TGTAGGACTAAGTTTCACTGGTGTTGCAGGTCCTAAGGAAGCAGAAGGTAAGCAGCCTGGTCTCGTATATGTAGGGCTAT
CAACTGAAGACGAACTGGTCTCATATGAACTTCGTCTTGCAGGCAGTCGCTCGAATATTCGTGAGCGCTCTGTTAAGTAT
GGTTTATATTATTTGTTACAATGGTTACGCAAGGAAATGAAAAAGGTGGATGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.439

98.086

0.514
  cinA Streptococcus mutans UA159

45.894

99.043

0.455
  cinA Streptococcus mitis NCTC 12261

44.66

98.565

0.44
  cinA Streptococcus mitis SK321

43.932

98.565

0.433
  cinA Streptococcus pneumoniae TIGR4

42.961

98.565

0.423
  cinA Streptococcus pneumoniae Rx1

42.476

98.565

0.419
  cinA Streptococcus pneumoniae R6

42.476

98.565

0.419
  cinA Streptococcus pneumoniae D39

42.233

98.565

0.416
  cinA Streptococcus suis isolate S10

39.286

93.78

0.368