Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGO15_RS09315 Genome accession   NZ_CP084622
Coordinates   1865066..1866106 (+) Length   346 a.a.
NCBI ID   WP_167832875.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1860066..1871106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS09290 - 1860563..1860823 (+) 261 WP_167832871.1 DUF3243 domain-containing protein -
  LGO15_RS09295 - 1861041..1861832 (+) 792 WP_214777055.1 DUF3388 domain-containing protein -
  LGO15_RS09300 - 1861853..1862734 (+) 882 WP_167832872.1 helix-turn-helix domain-containing protein -
  LGO15_RS09305 pgsA 1862914..1863492 (+) 579 WP_226087387.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LGO15_RS09310 cinA 1863515..1864762 (+) 1248 WP_226087388.1 competence/damage-inducible protein A Machinery gene
  LGO15_RS09315 recA 1865066..1866106 (+) 1041 WP_167832875.1 recombinase RecA Machinery gene
  LGO15_RS09320 rny 1866768..1868330 (+) 1563 WP_226087859.1 ribonuclease Y -
  LGO15_RS09325 - 1868570..1868782 (-) 213 WP_167832877.1 hypothetical protein -
  LGO15_RS09330 - 1868929..1869726 (+) 798 WP_167832878.1 TIGR00282 family metallophosphoesterase -
  LGO15_RS09335 spoVS 1870238..1870498 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37470.57 Da        Isoelectric Point: 4.9041

>NTDB_id=612012 LGO15_RS09315 WP_167832875.1 1865066..1866106(+) (recA) [Mesobacillus sp. S13]
MSDRQAALDMALKQIEKQFGKGSVMKLGEKTDTKISTSPSGSLALDAALGIGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISQEGEIIDMGSDLDIVDKSGSWYSYNGERLGQGRENAKLFLKENPSIRLEIKQK
IRNHYGLDGEFTVTESEEDQEELPLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=612012 LGO15_RS09315 WP_167832875.1 1865066..1866106(+) (recA) [Mesobacillus sp. S13]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAGATTGAAAAGCAATTTGGTAAAGGCTCAGTTATGAAATT
AGGGGAGAAGACAGACACTAAAATTTCTACTTCTCCAAGTGGATCCCTTGCGTTGGATGCTGCACTTGGAATAGGCGGAT
ATCCTCGCGGACGTGTTATTGAAATTTACGGACCTGAAAGTTCGGGTAAGACAACTGTTGCGCTTCATGCGATTGCAGAA
GTACAGGCTAATGGCGGCCAGGCGGCATTCATTGACGCTGAACACGCTCTTGATCCTGTATATGCACAGAAACTTGGGGT
AAATATCGATGAACTTCTTCTTTCTCAGCCTGACACAGGAGAGCAAGCTTTGGAAATCGCAGAAGCGCTTGTACGAAGTG
GCGCAATTGACATTATTGTTGTCGACTCCGTTGCTGCTCTAGTTCCAAAGGCTGAAATCGAAGGGGAGATGGGTGATGCC
CACGTTGGTCTTCAGGCCCGTTTGATGTCCCAGGCATTGCGTAAGCTTTCCGGTGCAATCAACAAGTCCAAGACTATTGC
AATCTTCATTAACCAGATTCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACGACACCTGGCGGACGCGCTTTGA
AATTCTATTCAAGCGTGCGTCTTGAAGTTCGCCGTGCTGAAACATTGAAGCAGGGCAATGAAATGGTAGGTAACAAAACT
AGAATTAAAGTCGTTAAGAATAAGGTTGCTCCTCCGTTCCGCACAGCTGAAGTGGATATCATGTACGGTGAAGGGATTTC
CCAAGAAGGAGAAATCATTGACATGGGATCAGACCTCGATATCGTCGATAAGAGCGGTTCATGGTATTCCTATAATGGTG
AGCGTCTAGGACAGGGAAGGGAAAATGCGAAGCTTTTCCTTAAAGAAAACCCGTCTATCCGTCTGGAAATCAAGCAAAAG
ATCCGTAATCACTACGGCCTTGACGGCGAGTTTACTGTTACTGAGAGTGAAGAAGATCAGGAAGAACTGCCATTAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.798

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

73.392

98.844

0.725
  recA Streptococcus pneumoniae R6

65.374

100

0.682
  recA Streptococcus pneumoniae Rx1

65.374

100

0.682
  recA Streptococcus pneumoniae D39

65.374

100

0.682
  recA Streptococcus pneumoniae TIGR4

65.374

100

0.682
  recA Streptococcus mitis NCTC 12261

65.642

100

0.679
  recA Streptococcus mitis SK321

65.363

100

0.676
  recA Streptococcus mutans UA159

66.86

99.422

0.665
  recA Streptococcus pyogenes NZ131

68.598

94.798

0.65
  recA Neisseria gonorrhoeae strain FA1090

64.516

98.555

0.636
  recA Neisseria gonorrhoeae MS11

64.516

98.555

0.636
  recA Neisseria gonorrhoeae MS11

64.516

98.555

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.824

98.266

0.627
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.376

0.624
  recA Ralstonia pseudosolanacearum GMI1000

65.549

94.798

0.621
  recA Helicobacter pylori 26695

64.242

95.376

0.613
  recA Helicobacter pylori strain NCTC11637

64.242

95.376

0.613
  recA Acinetobacter baylyi ADP1

61.111

98.844

0.604
  recA Vibrio cholerae strain A1552

65.312

92.486

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.312

92.486

0.604
  recA Pseudomonas stutzeri DSM 10701

65.312

92.486

0.604
  recA Acinetobacter baumannii D1279779

61.357

97.977

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

94.22

0.592
  recA Glaesserella parasuis strain SC1401

63.438

92.486

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.486

0.558