Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LGO15_RS09310 Genome accession   NZ_CP084622
Coordinates   1863515..1864762 (+) Length   415 a.a.
NCBI ID   WP_226087388.1    Uniprot ID   -
Organism   Mesobacillus sp. S13     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1858515..1869762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGO15_RS09285 ymfI 1859739..1860461 (+) 723 WP_167832870.1 elongation factor P 5-aminopentanone reductase -
  LGO15_RS09290 - 1860563..1860823 (+) 261 WP_167832871.1 DUF3243 domain-containing protein -
  LGO15_RS09295 - 1861041..1861832 (+) 792 WP_214777055.1 DUF3388 domain-containing protein -
  LGO15_RS09300 - 1861853..1862734 (+) 882 WP_167832872.1 helix-turn-helix domain-containing protein -
  LGO15_RS09305 pgsA 1862914..1863492 (+) 579 WP_226087387.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LGO15_RS09310 cinA 1863515..1864762 (+) 1248 WP_226087388.1 competence/damage-inducible protein A Machinery gene
  LGO15_RS09315 recA 1865066..1866106 (+) 1041 WP_167832875.1 recombinase RecA Machinery gene
  LGO15_RS09320 rny 1866768..1868330 (+) 1563 WP_226087859.1 ribonuclease Y -
  LGO15_RS09325 - 1868570..1868782 (-) 213 WP_167832877.1 hypothetical protein -
  LGO15_RS09330 - 1868929..1869726 (+) 798 WP_167832878.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44624.01 Da        Isoelectric Point: 4.8412

>NTDB_id=612011 LGO15_RS09310 WP_226087388.1 1863515..1864762(+) (cinA) [Mesobacillus sp. S13]
MNAEIIAVGSELLLGQIVNTNARFLSRQLADLGINVYYHTVVGDNPDRLKDAMEIAQERAELIIFTGGLGPTKDDLTKDT
IAGQLGKQLVLDEEAMKSIELYFEKTNRVMTENNRKQALVIEGCAVLKNDNGMAPGMFLVAGENKYMLLPGPPSEMEPMF
LKYGQNAIAGLSGNQAKIESRVLRFFGIGEAALESEIEDLIDQQSNPTIAPLAGDGEVTLRLTARDDANGTAQALIDQVE
AAIMERVGEHFYGYNETSLMIELSKLLKNENLTISAAESLTGGMFQQELSSISGASSLFHGGIVCYSNQAKIELVKVMPE
TIEKHGAVSSECAAELAANIASITHSDIGISFTGVAGPDSLEGHPAGTVFIGIHIKGMPVHVEKLSLSGARSAIRKRSVK
FGCQIIINRLSGTRK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=612011 LGO15_RS09310 WP_226087388.1 1863515..1864762(+) (cinA) [Mesobacillus sp. S13]
ATGAATGCCGAAATTATCGCTGTAGGATCAGAGTTGCTCCTTGGGCAAATCGTCAATACGAACGCCCGGTTCCTTTCCAG
GCAACTGGCCGATTTGGGAATCAATGTTTACTATCATACTGTTGTCGGAGATAATCCGGATAGATTAAAGGACGCCATGG
AAATCGCCCAGGAAAGGGCAGAGCTCATTATCTTTACAGGCGGATTGGGTCCAACAAAAGATGATCTTACAAAAGATACA
ATTGCCGGTCAGCTTGGAAAGCAGCTTGTACTTGATGAAGAAGCGATGAAGTCCATTGAATTGTATTTTGAAAAAACGAA
CAGGGTAATGACTGAAAACAACAGGAAGCAGGCTCTCGTGATCGAGGGATGCGCTGTCCTGAAAAATGATAACGGAATGG
CTCCCGGGATGTTCTTGGTGGCTGGCGAGAACAAGTACATGCTTCTCCCTGGTCCTCCTTCTGAAATGGAGCCAATGTTC
TTGAAATATGGCCAGAATGCTATTGCAGGCTTGTCTGGCAATCAAGCTAAAATTGAATCGAGAGTCCTGCGGTTCTTTGG
AATTGGTGAGGCGGCTCTGGAATCGGAAATAGAAGATTTGATTGACCAGCAAAGCAATCCAACCATCGCACCACTGGCTG
GAGATGGGGAAGTTACCCTAAGGCTTACAGCGAGGGATGACGCAAACGGAACTGCACAAGCATTGATTGATCAAGTAGAA
GCGGCAATCATGGAAAGAGTCGGCGAACATTTTTATGGTTACAACGAGACTTCGTTAATGATCGAGCTTTCTAAGTTATT
GAAAAATGAAAACCTGACAATATCAGCGGCAGAAAGTCTGACAGGAGGCATGTTCCAGCAAGAATTGTCTTCCATTTCTG
GTGCAAGCAGCTTGTTCCATGGCGGGATAGTCTGTTACTCGAACCAAGCTAAAATAGAATTGGTAAAGGTAATGCCTGAA
ACGATTGAAAAGCATGGAGCAGTAAGCAGTGAATGTGCCGCAGAGCTGGCAGCAAATATTGCTTCAATAACCCATTCTGA
CATTGGGATCAGCTTCACTGGAGTCGCCGGCCCTGACAGCCTGGAAGGTCATCCAGCTGGTACGGTTTTCATCGGGATAC
ATATCAAGGGAATGCCAGTCCATGTGGAAAAATTGAGCCTCAGCGGAGCGAGGTCGGCCATCAGGAAAAGGTCAGTAAAG
TTTGGCTGCCAGATCATAATTAATAGATTATCAGGAACACGGAAGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.924

98.554

0.581
  cinA Streptococcus pneumoniae TIGR4

45.673

100

0.458
  cinA Streptococcus pneumoniae Rx1

45.433

100

0.455
  cinA Streptococcus pneumoniae R6

45.433

100

0.455
  cinA Streptococcus pneumoniae D39

45.192

100

0.453
  cinA Streptococcus mitis SK321

48.429

92.048

0.446
  cinA Streptococcus mitis NCTC 12261

47.906

92.048

0.441
  cinA Streptococcus mutans UA159

45.161

97.108

0.439
  cinA Streptococcus suis isolate S10

40.318

90.843

0.366