Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M493_RS06090 Genome accession   NC_022080
Coordinates   1188535..1189350 (+) Length   271 a.a.
NCBI ID   WP_020959421.1    Uniprot ID   -
Organism   Geobacillus genomosp. 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1183535..1194350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS06070 (M493_06560) - 1184319..1185203 (+) 885 WP_020959417.1 helix-turn-helix domain-containing protein -
  M493_RS06075 (M493_06565) pgsA 1185282..1185860 (+) 579 WP_020959418.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M493_RS06080 (M493_06570) cinA 1185888..1187132 (+) 1245 WP_041267878.1 competence/damage-inducible protein A Machinery gene
  M493_RS06085 (M493_06575) - 1187311..1187604 (+) 294 Protein_1151 DNA recombination/repair protein RecA -
  M493_RS06090 (M493_06580) recA 1188535..1189350 (+) 816 WP_020959421.1 recombinase RecA Machinery gene
  M493_RS06095 (M493_06585) rny 1189794..1191350 (+) 1557 WP_020959422.1 ribonuclease Y -
  M493_RS06100 (M493_06590) - 1191460..1192254 (+) 795 WP_020959423.1 TIGR00282 family metallophosphoesterase -
  M493_RS06105 (M493_06595) spoVS 1192384..1192644 (+) 261 WP_008878506.1 stage V sporulation protein SpoVS -
  M493_RS06110 (M493_06600) - 1192737..1193660 (+) 924 WP_020959424.1 dipeptidase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29593.73 Da        Isoelectric Point: 4.9947

>NTDB_id=61048 M493_RS06090 WP_020959421.1 1188535..1189350(+) (recA) [Geobacillus genomosp. 3]
MKRGKIAPPGNAEGDYYLSLSLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG
EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDM
VGNKTRIKVVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGAWYSYKDERLGQGRENAKQFLKENPHIAE
EIARAIRSHYGIDAGETGGEPVQDEFGLLEE

Nucleotide


Download         Length: 816 bp        

>NTDB_id=61048 M493_RS06090 WP_020959421.1 1188535..1189350(+) (recA) [Geobacillus genomosp. 3]
GTGAAGCGGGGGAAAATAGCCCCTCCGGGTAATGCCGAGGGTGACTATTACCTATCGCTATCGCTCGACCCTATTTATGC
CCAAAAGTTAGGAGTCAATATTGATGAGTTGCTGCTTTCCCAACCTGATACGGGCGAGCAGGCGCTCGAAATTGCTGAAG
CGCTCGTGCGAAGCGGTGCGGTCGATATCATCGTCATCGACTCGGTAGCGGCGCTCGTGCCGAAAGCGGAAATTGAGGGG
GAGATGGGCGACGCCCACGTCGGTTTGCAAGCGCGCCTCATGTCGCAGGCGCTTCGCAAGTTGTCCGGCGCTATTAACAA
GTCGAAAACGATCGCCATCTTCATCAACCAAATCCGCGAGAAAGTCGGCGTCATGTTCGGCAATCCCGAGACGACGCCGG
GCGGACGGGCGCTCAAGTTTTACGCTTCCGTCCGTTTAGAGGTGCGCCGCGCCGAGCAAATCAAGCAAGGCAACGACATG
GTGGGCAACAAAACGAGAATCAAAGTCGTCAAAAACAAAGTGGCTCCGCCGTTTAAAACAGCTGATGTGGACATTATGTA
CGGCGAAGGCATTTCCCGCGAAGGGGAAATCCTTGATATGGCGTCAGAGCTGGATATCGTGCAAAAAAGCGGCGCGTGGT
ATTCGTACAAAGACGAGCGGCTCGGCCAAGGGCGGGAAAATGCAAAACAATTTTTGAAAGAAAACCCGCATATCGCCGAG
GAGATCGCCCGCGCCATCCGCAGCCATTACGGCATCGATGCCGGCGAGACGGGCGGCGAGCCGGTGCAAGACGAGTTTGG
GTTGCTTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.266

85.978

0.742
  recA Latilactobacillus sakei subsp. sakei 23K

76.293

85.609

0.653
  recA Streptococcus mitis NCTC 12261

68.675

91.882

0.631
  recA Streptococcus mitis SK321

68.273

91.882

0.627
  recA Streptococcus pneumoniae D39

70.417

88.561

0.624
  recA Streptococcus pneumoniae R6

70.417

88.561

0.624
  recA Streptococcus pneumoniae TIGR4

70.417

88.561

0.624
  recA Streptococcus pneumoniae Rx1

70.417

88.561

0.624
  recA Streptococcus mutans UA159

68.644

87.085

0.598
  recA Streptococcus pyogenes NZ131

68.936

86.716

0.598
  recA Lactococcus lactis subsp. cremoris KW2

66.949

87.085

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.56

88.93

0.583
  recA Ralstonia pseudosolanacearum GMI1000

68.103

85.609

0.583
  recA Neisseria gonorrhoeae strain FA1090

63.673

90.406

0.576
  recA Neisseria gonorrhoeae MS11

63.673

90.406

0.576
  recA Neisseria gonorrhoeae MS11

63.673

90.406

0.576
  recA Pseudomonas stutzeri DSM 10701

62.602

90.775

0.568
  recA Acinetobacter baumannii D1279779

62.449

90.406

0.565
  recA Vibrio cholerae strain A1552

66.96

83.764

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.96

83.764

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.931

85.609

0.539
  recA Glaesserella parasuis strain SC1401

64.035

84.133

0.539
  recA Acinetobacter baylyi ADP1

63.319

84.502

0.535
  recA Helicobacter pylori 26695

62.5

85.609

0.535
  recA Helicobacter pylori strain NCTC11637

62.5

85.609

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.435

82.288

0.506

Multiple sequence alignment