Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M493_RS06080 Genome accession   NC_022080
Coordinates   1185888..1187132 (+) Length   414 a.a.
NCBI ID   WP_041267878.1    Uniprot ID   -
Organism   Geobacillus genomosp. 3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1180888..1192132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M493_RS06050 (M493_06540) yfmH 1180999..1182288 (+) 1290 WP_020959413.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  M493_RS06055 (M493_06545) ymfI 1182345..1183061 (+) 717 WP_020959414.1 elongation factor P 5-aminopentanone reductase -
  M493_RS06060 (M493_06550) - 1183125..1183373 (+) 249 WP_020959415.1 DUF3243 domain-containing protein -
  M493_RS06065 (M493_06555) - 1183503..1184294 (+) 792 WP_020959416.1 DUF3388 domain-containing protein -
  M493_RS06070 (M493_06560) - 1184319..1185203 (+) 885 WP_020959417.1 helix-turn-helix domain-containing protein -
  M493_RS06075 (M493_06565) pgsA 1185282..1185860 (+) 579 WP_020959418.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M493_RS06080 (M493_06570) cinA 1185888..1187132 (+) 1245 WP_041267878.1 competence/damage-inducible protein A Machinery gene
  M493_RS06085 (M493_06575) - 1187311..1187604 (+) 294 Protein_1151 DNA recombination/repair protein RecA -
  M493_RS06090 (M493_06580) recA 1188535..1189350 (+) 816 WP_020959421.1 recombinase RecA Machinery gene
  M493_RS06095 (M493_06585) rny 1189794..1191350 (+) 1557 WP_020959422.1 ribonuclease Y -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44383.88 Da        Isoelectric Point: 6.5031

>NTDB_id=61047 M493_RS06080 WP_041267878.1 1185888..1187132(+) (cinA) [Geobacillus genomosp. 3]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAGLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
ISRLLGRRLVTDEEALRAIEAFFARTNRPMTENNKKQALILEGAAVLKNEHGMAPGMALTVDGITYMLLPGPPKEMQPMF
TKYGAPFLRGVFSLSGRIESRVLRFFGIGESALETALADLIDAQSNPTIAPLANDGEVTLRLTAKHQDQAEAKRLLDEAE
AAILTRVGRYCYGYNDETLFTKTLERLKERGWTIAAAESLTGGLFLEQLTAVPGASAAVSGGVVCYTNGVKEHLLGVPRP
LLETNGAVSEPCARLLAENVRTMCDADVGISFTGVAGPDPLEGHPPGTVYVGIAIRGRDTTVHRLALSGTRDAIRTRTAK
YGCFFLLETLAAGR

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=61047 M493_RS06080 WP_041267878.1 1185888..1187132(+) (cinA) [Geobacillus genomosp. 3]
GTGAATGCGGAGATTATTGCTGTCGGCTCGGAACTGCTGCTCGGACAAATTGCCAATACGAACGCTCAGTTTTTGTCGCA
ACAGCTCGCCGGCCTTGGCATTAACGTCTATTTTCATACGGTTGTCGGCGACAATGCCGGCCGTCTCGAACAAGCGGTGA
AAACCGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGGCTCGGCCCGACGAAAGACGATTTGACGAAAGAAACG
ATCTCCCGCCTGCTCGGCCGCCGGCTCGTGACCGATGAGGAAGCGCTGCGGGCGATTGAGGCGTTCTTTGCCCGCACGAA
CCGGCCGATGACAGAAAACAATAAAAAACAGGCGCTCATCTTGGAAGGGGCGGCCGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGTTGACGGTTGACGGCATTACATACATGTTGCTGCCGGGGCCGCCGAAAGAAATGCAGCCGATGTTT
ACGAAATACGGCGCCCCCTTTTTGCGCGGCGTTTTTTCGCTTTCCGGGCGCATCGAATCGCGCGTCCTCCGCTTTTTTGG
CATCGGCGAGTCGGCGCTTGAGACGGCGCTCGCCGACTTGATTGACGCCCAGTCGAATCCGACGATCGCCCCGCTCGCAA
ACGACGGCGAGGTAACGCTCCGTCTGACGGCAAAACATCAGGATCAAGCGGAAGCCAAGCGGCTGCTCGATGAGGCGGAA
GCCGCCATTTTGACGCGCGTCGGCCGTTATTGTTACGGATATAATGATGAAACGCTGTTTACAAAGACATTGGAACGGTT
AAAAGAAAGAGGGTGGACAATCGCCGCGGCGGAAAGCTTGACCGGAGGCCTGTTCCTTGAGCAGCTGACGGCCGTGCCGG
GGGCGTCGGCCGCCGTGAGCGGCGGCGTTGTCTGCTACACAAACGGCGTAAAAGAACACCTCCTTGGCGTGCCGCGGCCG
CTGTTGGAGACGAACGGAGCGGTAAGCGAACCGTGCGCCCGTCTGCTCGCCGAGAACGTGCGCACGATGTGTGATGCCGA
TGTCGGCATCAGCTTCACCGGCGTCGCCGGCCCCGATCCGCTCGAAGGCCATCCGCCGGGCACCGTGTATGTCGGCATCG
CCATACGCGGGCGCGACACCACCGTCCACCGCCTCGCATTATCCGGCACACGTGATGCCATCCGCACCCGCACCGCCAAA
TACGGCTGCTTTTTCTTGTTGGAGACGCTTGCGGCCGGCCGTTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.435

98.792

0.577
  cinA Streptococcus pneumoniae Rx1

48.798

100

0.49
  cinA Streptococcus pneumoniae TIGR4

48.798

100

0.49
  cinA Streptococcus pneumoniae R6

48.798

100

0.49
  cinA Streptococcus pneumoniae D39

48.558

100

0.488
  cinA Streptococcus mitis NCTC 12261

48.441

100

0.488
  cinA Streptococcus mitis SK321

51.175

92.512

0.473
  cinA Streptococcus mutans UA159

48.12

96.377

0.464
  cinA Streptococcus suis isolate S10

43.915

91.304

0.401

Multiple sequence alignment